LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja1g3937	ATGGGTCACATTGGTAGCAGCAAGGACGGCATTGGCATCAACCTCGACGACGACATCGTCGACGCCATGGACGTCGACGTCGACTTCGACCTCGACGACGACGACGAAGATTCCTCTTCCAACGCCGAGATTCTCAAGGAGCTAGGAGAAGACATGGTCAAGCATTTCTGCACCAAAGCTTCCAGAATGTTCTTCGACGAGCACGGCCTCGTCAGCCACCAGATAAACTCCTACAACCAGTTCATCGCCGCCGGTCTTCAAGCCGCGTTCGATGCCTTCGGCGACCTCAATGTCACGCCCAGCTACGATCCTTCCAAGAAGGGTGACAACGAGCATTTCAAATACGCCACCGTCAAGTTCGGGAAGGTAACGCTTGATCGGCCGAAGTTCTGGGGCGGCGCGGCGAATGCTCAGGAGTTTAAGATGCTTCCGAGACATGCACGCCTTCAGAGGATGACTTATGCTGCTAAAATGAAAGTCACTGTTGAAGTTCAGGTGTTTACGCCGCATAAGGTTCGGAGTGATAAGTTTAAGACTGGGAAAGAAGATTACATTGACAGAGAGATTATAAAGGAAGATAAGAGAGAGATAATTATTGGGAGATTGCCTGTTATGGTTATGTCTGATCTGTGCTGGATGAAGGAAGCTGAAAAGGGTGATTGCGATTTTGATCACGGAGGCTATTTCTTGATTAAGGGTGCTGAGAAGGCCTTTGTTGCACAGGAACAACTATTTCTTAAGAAGCTCTGGGTTTCAAATACTCCAGATTGGGCAATTGGGTACAAGTCGCTGAACAAGCGAAATCGGTTGATTCTGAAACTTGTTGGCAATTCCAAATTTGAAGAAATAAACAATGGGGAGAAGGTCCTGAGTGTTTATTTCTTGGGTGTGGAGGTTCCCGTATGGATACTGTTTTTCAGTCTTGGCGTCTCATCAGACAAAGAGATCATAGATCTCATTGATTATGGGAATGAAGATACCCAAATTCAGAATATCTTCTTTGGATCCATTCGTGATGCCGATGAGAAATGTTCTGGTTTTCGTAAAGGGAAGAACGCACTGCACTACATGGAGGAACATGTGAAAGGTATCCAGTATCCTCCTTCAGAGTCTATGGAGGAGTGCCTGAACTTGTACCTCTTTCCTGGCAGCAGCGGTTTGAATAGGAAGGCACGCTTCCTTGCGTATATGGTGAAGAGTCTGTTGCTTGCATATACGGGCCGCAGAAAATGCGATAACAGGGATGATTTCCGCAATAAGAGGTTTGAGTTGGCTGCTGAGCTGCTTGAGCGTGAGCTGAAAGTGCACTTTGCACACGCCCGAAAGCGAATGTCTAAGGCTTTGCAGAGAGATCTGAATGGAGATCGTGATGTGCGCCCAATTGAGCACTATCTCGATGCTTCAATTATTACCAATGGTCTCCAAAGGGCCTTTTCCACTGGAGCGTGGACTCATCCTTATAAAAGGTTAGAAAGGACCTCTGGTGTTGTTGCAAATCTTGGGCGAACTAATCCATTACAGACCATGGCTGAATTAAGAAGAACAAGGCAACAAGTTCAGTACACTGGAAAGGTTGGGGATGCTAGATACCCGCATCCTTCTCACTGGGGCAAGGTCTGTTTCCTCTCTACCCCGGATGGTGAAAATTGTGGACTAGTAAAAAATTTGTCTGTCACAGGACTAGTGAGTACAAACATAAGTGAATCTATATTTCCTCAGTTGCTTGATTGTGGAATGGAAGAGCTTGTTGATGATACTACCACTTTTCTGAGCAAAAAAGACAAAGTCTTCCTAAATGGGGATTGGGTTGGAGTTTGTCCAGATCCAATTTCATTTGTGGCAGGTCTACGGAGTAAAAGGCGTAGAAATGAATTGCCACACCAGGTGGAAATTAAAAGAGATCAACATCAACAAGAAGTGCGCATATACTCTGATGCTGGAAGGATTCTACGTCCTCTTTTGGTAGTTCGTAATTTGCTCAAGATTAAAGGATCTAAGTCGGAACCTCAAACTTTCCAGTCCCTATTGGATAATGGTGTGATTGAACTGGTAGGACCAGAAGAAGAAGAGGACTGCTGCACTGCTTGGGGTGTTCAGAGTTTATTTGAAAAAGTGGGAAAATCCTCTGTAAAGTACACACATTGCGAACTTGACAAGTCATTCTTATTGGGTTTAGGCTGTTCACTTATTCCATTTCCAAATCATGACCATGCAAGGAGGGTACTCTACCAGTCTCAAAAACACTCTTCACAGGCTATTGGCTATTCCACAACAAACCCTGATATTAGAGTTGATACTTTATCTCATCAATTGCATTATCCCCAAAAGCCACTTTTCCGAACAATGATATCTGACTGCCTGGGAAAACCACAGCCACTAGCTCAAAATCAAGTTCTTCCAAAGGCTGAGTTCTATAATGGGCAGAATGCAATTGTTGCTGTCAATGTACATATGGGATACAATCAGGAAGATTCTCTGGTGATGAATCGTGCTTCTTTGCAGCGTGGTATGTTTAGATCTGAGCACGTACGGAGTTACAAATCTGAGATTGAAAATAAGGACTCTGCAGAGAAGAAACGGAAACCAGATGATATTGTCAATTTTGGGAAGGTTGAAAGTAAAATTGGCCGAGTCGATAGCCTTGATGATGATGGCTTTCCATATGTTGGTGCAAATTTGCAAAGTGGGGATATCATTATTGGGCGGGGTGCTGAGTCAGGAGCAGACCATAGTATTAAGTTAAAACACACTGAAAGGGGTTATGTTCAAAAGGTTGTCTTATCTTCCAATGACGAGGGAAAGAATTTTGCCACAGTTTCATTAAGACAGGTTCGTAGTCCAGTTCTTGGAGACAAGTTCTCCAGCATGCATGGTCAAAAGGGTGTCTTAGGATTTCTGGAGTCTCAGGAAAATTTTCATTTCACAAGCCAAGGCATTGTTCCTGATATTGTCATTAATCCGCATGCATTTCCCTCACGACAAACTCCTGGGCAACTCCTTGAAGCTGCTTTAGGAAAGGGGATTGCTGGTGCTTTAGAAAAGAGGTTTTCTCGTCGTGGATTATTGAGACATGCTACCCCTTTCTCCACTCCCTCTGTCGAAGCCATTATGGACCAGCTTCACAGAGCTGGGTTTTCAAGGTCGGGAACTGAGAGGGTATATGATGGGAGGACTGGTGAGATGGTGCGTTCGCTCATATTTATGGGCCCCACCTTCTATCAGAGACTACACCACATGTCTGAGGACAAAGTAAAATTCAGGAACACTGGTCCGGTTCACCCGCTAACCCGACAGCCTGTTGCTGACCGGAAGCGATTTGGAGGTATCAAGTTTGGTGAAATGGAGCGTGATTGCCTCATAGCACATGGCGCATCAGCAAACCTGTATGAACGCCTCTTCACTCTGAGTGACTCGTCCCAGATACACATTTGCAGTAAATGCAAAAATGTTGCAAATGTGATCTTAAGGCCGGTGGCTGGTGGCCGTAAAATACGAGGTCCCTATTGCCGCTTCTGTGAATCTGCTGATGACATTGTGGTAGCCAATGTCCCTTATGGAGCTAAGTTATTGAGCCAAGAGCTTTTTAGCATGGGCATTAATCTCAAATTTGAAACTGAACTTTGCTAG	3627	0.4497	MGHIGSSKDGIGINLDDDIVDAMDVDVDFDLDDDDEDSSSNAEILKELGEDMVKHFCTKASRMFFDEHGLVSHQINSYNQFIAAGLQAAFDAFGDLNVTPSYDPSKKGDNEHFKYATVKFGKVTLDRPKFWGGAANAQEFKMLPRHARLQRMTYAAKMKVTVEVQVFTPHKVRSDKFKTGKEDYIDREIIKEDKREIIIGRLPVMVMSDLCWMKEAEKGDCDFDHGGYFLIKGAEKAFVAQEQLFLKKLWVSNTPDWAIGYKSLNKRNRLILKLVGNSKFEEINNGEKVLSVYFLGVEVPVWILFFSLGVSSDKEIIDLIDYGNEDTQIQNIFFGSIRDADEKCSGFRKGKNALHYMEEHVKGIQYPPSESMEECLNLYLFPGSSGLNRKARFLAYMVKSLLLAYTGRRKCDNRDDFRNKRFELAAELLERELKVHFAHARKRMSKALQRDLNGDRDVRPIEHYLDASIITNGLQRAFSTGAWTHPYKRLERTSGVVANLGRTNPLQTMAELRRTRQQVQYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLSVTGLVSTNISESIFPQLLDCGMEELVDDTTTFLSKKDKVFLNGDWVGVCPDPISFVAGLRSKRRRNELPHQVEIKRDQHQQEVRIYSDAGRILRPLLVVRNLLKIKGSKSEPQTFQSLLDNGVIELVGPEEEEDCCTAWGVQSLFEKVGKSSVKYTHCELDKSFLLGLGCSLIPFPNHDHARRVLYQSQKHSSQAIGYSTTNPDIRVDTLSHQLHYPQKPLFRTMISDCLGKPQPLAQNQVLPKAEFYNGQNAIVAVNVHMGYNQEDSLVMNRASLQRGMFRSEHVRSYKSEIENKDSAEKKRKPDDIVNFGKVESKIGRVDSLDDDGFPYVGANLQSGDIIIGRGAESGADHSIKLKHTERGYVQKVVLSSNDEGKNFATVSLRQVRSPVLGDKFSSMHGQKGVLGFLESQENFHFTSQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAGALEKRFSRRGLLRHATPFSTPSVEAIMDQLHRAGFSRSGTERVYDGRTGEMVRSLIFMGPTFYQRLHHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLYERLFTLSDSSQIHICSKCKNVANVILRPVAGGRKIRGPYCRFCESADDIVVANVPYGAKLLSQELFSMGINLKFETELC*	1209

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja1g3937	1208	Pfam	RNA polymerase Rpb2, domain 2	294	421	IPR007642	GO:0003677\|GO:0003899\|GO:0006351
	Lja1g3937	1208	SUPERFAMILY	beta and beta-prime subunits of DNA dependent RNA-polymerase	52	1206	-	-
	Lja1g3937	1208	Pfam	RNA polymerase beta subunit	69	460	IPR007644	GO:0003677\|GO:0003899\|GO:0006351
	Lja1g3937	1208	PANTHER	DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2	38	1205	IPR015712	GO:0003899\|GO:0006351\|GO:0032549
	Lja1g3937	1208	Gene3D	-	412	597	-	-
	Lja1g3937	1208	Gene3D	-	62	244	-	-
	Lja1g3937	1208	Gene3D	-	728	1091	IPR037033	GO:0003677\|GO:0003899\|GO:0006351
	Lja1g3937	1208	PANTHER	DNA-DIRECTED RNA POLYMERASE D SUBUNIT 2B-RELATED	38	1205	-	-
	Lja1g3937	1208	Pfam	RNA polymerase Rpb2, domain 6	727	1105	IPR007120	GO:0003677\|GO:0003899\|GO:0006351
	Lja1g3937	1208	CDD	RNA_pol_B_RPB2	70	1204	IPR015712	GO:0003899\|GO:0006351\|GO:0032549
	Lja1g3937	1208	Pfam	RNA polymerase Rpb2, domain 5	672	718	IPR007647	GO:0006351
	Lja1g3937	1208	Pfam	RNA polymerase Rpb2, domain 7	1107	1205	IPR007641	GO:0003677\|GO:0003899\|GO:0006351
	Lja1g3937	1208	Gene3D	RNA polymerase Rpb2, domain 2	257	411	IPR037034	GO:0003677\|GO:0003899\|GO:0006351
	Lja1g3937	1208	Pfam	RNA polymerase Rpb2, domain 4	596	656	IPR007646	GO:0003677\|GO:0003899\|GO:0006351
	Lja1g3937	1208	ProSitePatterns	RNA polymerases beta chain signature.	950	962	IPR007121	GO:0003677\|GO:0003899\|GO:0006351
	Lja1g3937	1208	Gene3D	-	758	946	IPR014724	GO:0003899
	Lja1g3937	1208	Pfam	RNA polymerase Rpb2, domain 3	500	559	IPR007645	GO:0003677\|GO:0003899\|GO:0006351
	Lja1g3937	1208	Gene3D	RNA polymerase alpha subunit dimerisation domain	1092	1206	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja1g3937	Lja-Chr1	49917388	49923073	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja1g3937	-		K16252	gmx:100815934	1981.07

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lja1g3937	1	49917388	49923073	Lja1g3937	1	49917388	49923073	ECH