Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3933 ATGGATGAAGATGAAATCGTCGGATACGTGACTGCGTACTTGAAGAAGAAAGGGTTTACGCAGACTGAGAAGGTTTTCCAGGAAGAGTTTCAGCACAACAAGAACACCACCACCACCGTCGAACCTGACATTGCCAACCACCTTCAAGCTCTTTCTCAATTGGAGACTGGTCCTGCTAGGTTTCACGATGGATATAGCGGGCTTAGAACATGGACTTACTCTTCACTGGATTTGTACAAGCATGAGTTGCTTCGTGTGCTTTATCCAGTGTTTATACATTGCTTTATGGATCTTGTTGCAAAAGGGCATATTCAGGAAGCTCGGAATTTTTTCAATGCCTTCCGTGAAGACCATGAAATGATGCACTTGCGTGACCTTCAGAAGTTGGAAGGGGTTCTTACTCCTACTCACCTGGAGGAAATGGAATTTGCGCATTCACTTAGGCAGAGCAAATTCAACATCAAGATATGTGAGTATTCCTATGAGCTTCTGTTGCAACATCTACATAGGACACAATCCACCACTATACTTGGTATAATCAATGAGCATATCAACTTCCAAGTTAGCCCTGGACAACCGAGCTTAATCTCTGATGATCCTGAGGCTGTTACCCTTAGTGGAAGCAGCCAGGACGCAGCAAACCGGATAAATCAGAAAGAAATACATTGGGGGCTGCTTGAAGACTCTATAGAAGAGCGGCTGGAGAAAGCTGGAGCCTTGCTTTCAGACTCTGAAAAGGGTGATGGAGAAGCAAAAGAAGGGGAGAATGATGAGAGTAAGAAAAGATCAATTGAAGTCGGAAAGCAAGGTTCTTCTGTCAAAAAGGTAAAAAAGGACAAGGGTGGAAGTGCAACAGGAAAAAATGCAAAACCTGAAGTTAACACTGTACCAGCAGCTCCTCGAGTTAAGCCAGAACTTTCCTTGCCCATAATTTCAACTGAGGTAGAACACTCCATCCTTGATGATCTAAGGAACCGTGTACAACTTAGTAGTGTTGCACTTCCATCGGTTAGCTTTTACACATTTATCAATACTCACAACAGTTTAAGCTGTTCGTCGATATCCCATGATGGATCATTAGTTGCTGGGGGATTTTCTGACTCATCGCTGAAGGTTTGGGATATGGCAAAGCTTGGACAACAGCCCACCAGTTCTTCACAGGGTGAGAATGACACATCACAAAATGAACAAGTGCTCGGGCAAAGTGGTGGGAAGAGACAGTATACATTGTTTCAAGGTCATTCTGGGCCTGTTTATGCAGCCTCTTTTAGTCCTGTTGGGGACTTCATTCTTTCATCATCAGCAGACTCGACAATTCGACTCTGGAGCACAAAGCTTAATGCCAATCTTGTTTGTTACAAGGGTCACAATTACCCTGTCTGGGATGTTCAGTTTAGTCCCGTGGGGCATTATTTTGCCAGCTCTTCACACGACAGAACTGCTAGGGTTTGGTCCATGGACAGGATACAGCCATTACGAATAATGGCAGGGCACTTGTCTGATGTCGATTGCGTGCAATGGCATGTCAACTGCAACTACATCGCAACTGGCTCCAGTGACAAAACTGTTAGACTATGGGATGTGCAGAGTGGAGAGTGTGTCCGAGTTTTTGTTGGTCACAGGGGTATGATTTTGGCTTTGGCAATGTCTCCTGACGGTCGCTATATGGCATCCGGTGATGAAGATGGCACCATCATGATGTGGGACCTCTCTAGTGGTCGCTGTCTCACACCTTTGATCGGTCACACATCCTGTGTCTGGTCACTAGCTTTCAGTTCTGAAGGTTCTATGCTAGCTTCTGGATCTGCTGATAGCTCTGTGAAATTATGGGATGTAAATACAAGCACTAAGGTTTCTAGGACTGAGGAAAAAAGTGGGAATACTAACAGACTCAGATCGCTGAAAACTCTGCCTACCAAATCTACTCCTGTTTCGTCTTTGCGGTTTTCTCGAAGGAATCTTCTTTTTGCAGCTGGAGCTCTTGCAAAAAACGGCTAA 1998 0.4479 MDEDEIVGYVTAYLKKKGFTQTEKVFQEEFQHNKNTTTTVEPDIANHLQALSQLETGPARFHDGYSGLRTWTYSSLDLYKHELLRVLYPVFIHCFMDLVAKGHIQEARNFFNAFREDHEMMHLRDLQKLEGVLTPTHLEEMEFAHSLRQSKFNIKICEYSYELLLQHLHRTQSTTILGIINEHINFQVSPGQPSLISDDPEAVTLSGSSQDAANRINQKEIHWGLLEDSIEERLEKAGALLSDSEKGDGEAKEGENDESKKRSIEVGKQGSSVKKVKKDKGGSATGKNAKPEVNTVPAAPRVKPELSLPIISTEVEHSILDDLRNRVQLSSVALPSVSFYTFINTHNSLSCSSISHDGSLVAGGFSDSSLKVWDMAKLGQQPTSSSQGENDTSQNEQVLGQSGGKRQYTLFQGHSGPVYAASFSPVGDFILSSSADSTIRLWSTKLNANLVCYKGHNYPVWDVQFSPVGHYFASSSHDRTARVWSMDRIQPLRIMAGHLSDVDCVQWHVNCNYIATGSSDKTVRLWDVQSGECVRVFVGHRGMILALAMSPDGRYMASGDEDGTIMMWDLSSGRCLTPLIGHTSCVWSLAFSSEGSMLASGSADSSVKLWDVNTSTKVSRTEEKSGNTNRLRSLKTLPTKSTPVSSLRFSRRNLLFAAGALAKNG* 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3933 665 CDD TAF5_NTD2 58 190 IPR007582 -
Lja1g3933 665 ProSiteProfiles Trp-Asp (WD) repeats profile. 579 620 IPR001680 GO:0005515
Lja1g3933 665 Gene3D - 491 570 IPR015943 GO:0005515
Lja1g3933 665 Gene3D TFIID subunit TAF5, NTD2 domain 36 189 IPR037264 -
Lja1g3933 665 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 411 443 - -
Lja1g3933 665 ProSiteProfiles Trp-Asp (WD) repeats profile. 537 578 IPR001680 GO:0005515
Lja1g3933 665 ProSitePatterns Trp-Asp (WD) repeats signature. 514 528 IPR019775 -
Lja1g3933 665 ProSitePatterns Trp-Asp (WD) repeats signature. 361 375 IPR019775 -
Lja1g3933 665 ProSitePatterns Trp-Asp (WD) repeats signature. 556 570 IPR019775 -
Lja1g3933 665 SUPERFAMILY WD40 repeat-like 336 659 IPR036322 GO:0005515
Lja1g3933 665 Gene3D - 242 490 IPR015943 GO:0005515
Lja1g3933 665 ProSitePatterns Trp-Asp (WD) repeats signature. 598 612 IPR019775 -
Lja1g3933 665 SUPERFAMILY Taf5 N-terminal domain-like 47 189 IPR037264 -
Lja1g3933 665 ProSiteProfiles Trp-Asp (WD) repeats profile. 342 375 IPR001680 GO:0005515
Lja1g3933 665 ProSiteProfiles Trp-Asp (WD) repeats profile. 411 443 IPR001680 GO:0005515
Lja1g3933 665 ProSiteProfiles Trp-Asp (WD) repeats profile. 453 494 IPR001680 GO:0005515
Lja1g3933 665 PRINTS G protein beta WD-40 repeat signature 430 444 IPR020472 -
Lja1g3933 665 PRINTS G protein beta WD-40 repeat signature 514 528 IPR020472 -
Lja1g3933 665 PRINTS G protein beta WD-40 repeat signature 598 612 IPR020472 -
Lja1g3933 665 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 453 487 - -
Lja1g3933 665 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 495 532 - -
Lja1g3933 665 MobiDBLite consensus disorder prediction 239 300 - -
Lja1g3933 665 ProSiteProfiles Trp-Asp (WD) repeats profile. 495 536 IPR001680 GO:0005515
Lja1g3933 665 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 579 614 - -
Lja1g3933 665 MobiDBLite consensus disorder prediction 239 285 - -
Lja1g3933 665 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID 3 662 IPR037783 -
Lja1g3933 665 MobiDBLite consensus disorder prediction 379 399 - -
Lja1g3933 665 CDD WD40 411 660 - -
Lja1g3933 665 SMART WD40_4 530 569 IPR001680 GO:0005515
Lja1g3933 665 SMART WD40_4 446 485 IPR001680 GO:0005515
Lja1g3933 665 SMART WD40_4 572 611 IPR001680 GO:0005515
Lja1g3933 665 SMART WD40_4 404 443 IPR001680 GO:0005515
Lja1g3933 665 SMART WD40_4 488 527 IPR001680 GO:0005515
Lja1g3933 665 SMART WD40_4 335 374 IPR001680 GO:0005515
Lja1g3933 665 Pfam WD40 associated region in TFIID subunit, NTD2 domain 56 184 IPR007582 -
Lja1g3933 665 PANTHER CANNONBALL-RELATED 3 662 - -
Lja1g3933 665 ProSiteProfiles LIS1 homology (LisH) motif profile. 2 34 IPR006594 GO:0005515
Lja1g3933 665 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 537 574 - -
Lja1g3933 665 Gene3D - 571 663 IPR015943 GO:0005515
Lja1g3933 665 Pfam WD domain, G-beta repeat 450 485 IPR001680 GO:0005515
Lja1g3933 665 Pfam WD domain, G-beta repeat 490 527 IPR001680 GO:0005515
Lja1g3933 665 Pfam WD domain, G-beta repeat 408 443 IPR001680 GO:0005515
Lja1g3933 665 Pfam WD domain, G-beta repeat 344 374 IPR001680 GO:0005515
Lja1g3933 665 Pfam WD domain, G-beta repeat 573 611 IPR001680 GO:0005515
Lja1g3933 665 Pfam WD domain, G-beta repeat 531 569 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3933 405 614 Miscellaneous Gene Families AT5G08390 31.776 1.69e-28 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3933 K03130 - gmx:100805953 1206.43