Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3927 ATGGCGACCAGAAGAACACCGTCGCTAACCAAATCCATTCTCACCGCCGCAACCGTTTCCAGAACCAACCCACGGCGAACCCCTCTCTCCTCCCTCTCTCGCTCCGCCGCACTCCTCCCCCCTCACACCACAAACCCTCTCTCACGGTCACCACCAACCAATGTCTCCTCCGCCAACTTCCTCTCCCACTCTTTCACCCTCTCTCGCTCCTTCCACGCTTCCACTCCCTCCCTCCGCTCCGCCGGAACCTCTCAGCAGGTAACACCGACAGAGTTCACAGAGATGGCATGGGAAGGCATTGTGGGTGCTGTTGATGCTGCACGAGTTAGCAAACAACAAATTGTGGAATCTGAGCATTTGATGAAAGCACTCTTGGAGCAAAAAGATGGTTTGGCCAGAAGGATTTTCACTAAGGCTGGATTGGACAACACTTCTGTTCTTCAGGCTACTGAGGATTTCATAGCTCAACAACCTAAGGTTACTGGTGATACTACTGGTCCTTTCATGGGTTCACATGTTAGCTCACTCTTGGACAATTCGCGAAAGCACAAGAAAGAAATGGGTGATGAGTTTGTGTCTGTGGAGCACCTTTTGCTGGCTTTTCATTCAGATAAGAGGTTTGGGCAACAATTATTTAAGAATCTTCAGCTTAGCGAGAAGGCCTTGAAGGACGCGGTACAAGCTGTTCGTGGAAGCCAAAGAGTGACTGATCAAAATCCTGAGGGGAAATATGAGGCATTGGACAAGTATGGAAGTGACCTGACTGAACTTGCTAGGCGTGGCAAGCTTGATCCTGTCATTGGTCGAGATGATGAAATTCGACGCTGTATCCAGATATTGTCAAGGAGAACTAAAAACAATCCAGTTATTATTGGTGAACCTGGTGTGGGGAAAACTGCAATTGCCGAAGGATTAGCTCAACGTATTGTGCGTGGAGATGTTCCAGAGCCATTGATGAACCGAAAGCTGATCTCCCTTGATATGGGGTCATTGCTTGCTGGTGCCAAGTTTCGTGGAGATTTTGAAGAAAGATTGAAAGCTGTCCTTAAAGAAGTTACTGCATCAAATGGACAAATAATTTTATTTATCGATGAAATTCATACCGTTGTTGGTGCAGGGGCTACAAGTGGTGCAATGGATGCTGGAAACTTGTTGAAACCAATGCTCGGAAGAGGTGAACTTCGATGTATAGGAGCAACTACATTGAATGAGTATAGAAAATATATTGAAAAGGATCCAGCACTTGAGCGTAGATTTCAACAAGTGTTTTGCTGTCAACCATCTGTAGAAGATACAATATCCATTCTTCGTGGGTTGCGTGAGCGCTATGAGTTGCATCATGGTGTCAAAATATCGGATAGTGCACTTGTTTCGGCTGCAGTTCTAGCAGATCGATACATCACAGAACGCTTCTTGCCAGACAAAGCTATTGATCTTGTCGATGAAGCTGCTGCAAAGCTGAAGATGGAGATCACCTCTAAGCCTACCGAATTGGATGAGATAGACAGAGCGGTCTTGAAATTGGAGATGGAAAAACTCTCTCTGAAAAATGATACTGACAAGGCATCTAAAGAAAGATTGAGTAAGCTTGAAAATGATTTGAGTTTACTTAAACAGAAGCAAAAAGAACTGACGGATCATTGGGACAGTGAAAAAGTGTTAATGACTCGGATAAGATCTATCAAAGAAGAGATTGATAGAGTCAACCTAGAGATGGAAGCTGCCGAACGTGATTATGACTTGAACCGTGCGGCCGAGCTTAAGTATGGAACTTTGATGTCCCTTCAACGCCAATTGGAAGAAGCTGAAAAGAATCTAGTTGATTTCCGAGAATCTGGACAATCTTTACTTCGAGAAGAAGTCACTGACCTTGATATCACTGAGATTGTATGTAAATGGACTGGTATACCATTATCAAACCTTCAACAAACAGAGAGAGAAAAATTAGTTTCGCTGGAACATGTTCTTCATAAGAGGGTGGTCGGTCAAGACATTGCTGTGAAGTCTGTAGCTGATGCGATTCGCCGTTCAAGGGCTGGATTGTCTGACCCAAATCGTCCAATTGCAAGCTTCATGTTTATGGGTCCAACTGGTGTTGGGAAAACGGAGCTTGCCAAGGCTTTGGCTGGTTACTTGTTTAACACAGAAAATGCTCTTGTTAGAATTGATATGAGTGAGTACATGGAGAAACATGCTGTCTCACGTTTAGTTGGGGCCCCTCCTGGTTATGTTGGTTATGAAGAAGGTGGTCAGCTAACTGAAGTGGTCCGGCGAAGACCCTACTCTGTGGTATTATTTGATGAAATAGAGAAGGCACATCATGATGTCTTCAACATCTTGTTGCAGTTGTTGGATGATGGAAGAATTACTGATTCTCAAGGAAGGACTGTTAGCTTCACAAATTGTGTTGTGATTATGACTTCAAATATTGGGTCTCATCACATACTTGAAACCCTTCGTAGTACACAAGATGATAAAATTGCAGTTTACAATCAGATGAAAACGCAAGTTGTTGAGCTAGCTAGGCAAACATTCCGCCCAGAGTTCATGAACCGCATCGATGAATATATTGTTTTCCAGCCTCTAGATTCCAAAGAGATCAGCAAAATTGTGGAGCTTCAGATGGAACGGGTGAAGAACAGGCTCAAGCAAAAGAAAATCGATCTCCATTACACACAAGAAGCCCTTGAACTTCTTAGTGTATTGGGTTTTGATCCCAATTTTGGAGCAAGACCAGTTAAAAGAGTAATACAACAATTAGTTGAGAATGAAATTGCGATGGGAGTCCTAAGGGGAGATTTCAAAGAAGATGACTCAATCATTGTTGATGCTGATATGACTTCATCAGCCAAGGAAGGTCCTCCCCTTAATAGACTACTTGTTAAGAAGCTGGACAGCCCGGTTGCTGATGCCATGGTTGCCAATGACTAA 2931 0.4388 MATRRTPSLTKSILTAATVSRTNPRRTPLSSLSRSAALLPPHTTNPLSRSPPTNVSSANFLSHSFTLSRSFHASTPSLRSAGTSQQVTPTEFTEMAWEGIVGAVDAARVSKQQIVESEHLMKALLEQKDGLARRIFTKAGLDNTSVLQATEDFIAQQPKVTGDTTGPFMGSHVSSLLDNSRKHKKEMGDEFVSVEHLLLAFHSDKRFGQQLFKNLQLSEKALKDAVQAVRGSQRVTDQNPEGKYEALDKYGSDLTELARRGKLDPVIGRDDEIRRCIQILSRRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPEPLMNRKLISLDMGSLLAGAKFRGDFEERLKAVLKEVTASNGQIILFIDEIHTVVGAGATSGAMDAGNLLKPMLGRGELRCIGATTLNEYRKYIEKDPALERRFQQVFCCQPSVEDTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFLPDKAIDLVDEAAAKLKMEITSKPTELDEIDRAVLKLEMEKLSLKNDTDKASKERLSKLENDLSLLKQKQKELTDHWDSEKVLMTRIRSIKEEIDRVNLEMEAAERDYDLNRAAELKYGTLMSLQRQLEEAEKNLVDFRESGQSLLREEVTDLDITEIVCKWTGIPLSNLQQTEREKLVSLEHVLHKRVVGQDIAVKSVADAIRRSRAGLSDPNRPIASFMFMGPTGVGKTELAKALAGYLFNTENALVRIDMSEYMEKHAVSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFDEIEKAHHDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHHILETLRSTQDDKIAVYNQMKTQVVELARQTFRPEFMNRIDEYIVFQPLDSKEISKIVELQMERVKNRLKQKKIDLHYTQEALELLSVLGFDPNFGARPVKRVIQQLVENEIAMGVLRGDFKEDDSIIVDADMTSSAKEGPPLNRLLVKKLDSPVADAMVAND* 977
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3927 976 MobiDBLite consensus disorder prediction 21 55 - -
Lja1g3927 976 Pfam ATPase family associated with various cellular activities (AAA) 290 423 IPR003959 GO:0005524|GO:0016887
Lja1g3927 976 Coils Coil 520 547 - -
Lja1g3927 976 Pfam AAA lid domain 428 530 IPR041546 -
Lja1g3927 976 Coils Coil 498 518 - -
Lja1g3927 976 ProSiteProfiles Clp repeat (R) domain profile. 89 232 IPR004176 -
Lja1g3927 976 SUPERFAMILY Double Clp-N motif 91 242 IPR036628 -
Lja1g3927 976 ProSitePatterns Chaperonins clpA/B signature 2. 721 739 IPR028299 -
Lja1g3927 976 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 245 635 IPR027417 -
Lja1g3927 976 SMART ClpB_D2_small_2 862 956 IPR019489 -
Lja1g3927 976 Gene3D - 88 234 IPR036628 -
Lja1g3927 976 Gene3D - 429 634 IPR027417 -
Lja1g3927 976 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 736 754 IPR001270 GO:0005524
Lja1g3927 976 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 765 783 IPR001270 GO:0005524
Lja1g3927 976 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 691 709 IPR001270 GO:0005524
Lja1g3927 976 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 798 812 IPR001270 GO:0005524
Lja1g3927 976 Gene3D - 235 428 IPR027417 -
Lja1g3927 976 Gene3D - 639 860 IPR027417 -
Lja1g3927 976 ProSitePatterns Chaperonins clpA/B signature 1. 380 392 IPR018368 GO:0005524
Lja1g3927 976 PANTHER BNAC09G42450D PROTEIN 65 972 - -
Lja1g3927 976 CDD AAA 661 816 - -
Lja1g3927 976 Pfam AAA domain (Cdc48 subfamily) 686 855 IPR003959 GO:0005524|GO:0016887
Lja1g3927 976 CDD AAA 267 427 - -
Lja1g3927 976 PANTHER ATP-DEPENDENT CLP PROTEASE 65 972 - -
Lja1g3927 976 Coils Coil 558 578 - -
Lja1g3927 976 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 636 942 IPR027417 -
Lja1g3927 976 TIGRFAM chaperone_ClpB: ATP-dependent chaperone protein ClpB 92 945 IPR017730 GO:0005737|GO:0009408|GO:0042026
Lja1g3927 976 Pfam C-terminal, D2-small domain, of ClpB protein 862 942 IPR019489 -
Lja1g3927 976 Gene3D - 862 953 - -
Lja1g3927 976 Pfam Clp amino terminal domain, pathogenicity island component 103 154 IPR004176 -
Lja1g3927 976 Pfam Clp amino terminal domain, pathogenicity island component 182 231 IPR004176 -
Lja1g3927 976 Coils Coil 585 619 - -
Lja1g3927 976 SMART AAA_5 284 429 IPR003593 -
Lja1g3927 976 SMART AAA_5 687 828 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3927 Lja-Chr1 49807213 49816878 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3927 K03695 - gmx:100782242 1698.33