Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3925 ATGTCGATTTTACAGAAAGGCGATTCGGTTCAAATCAGGGAGGTTTGGAATGATAATTTGGAGGAGGAGTTTGCTCTGATCCGTGAAATTGTTGACGATTTCAGCTATGTAGCGATGGATACTGAGTTTCCTGGTGTGGTTCTTCGTCCTTTAGGTAACTTCAAGAACATCAATGACTATAACTACCAGACTCTGAAGGATAACGTTGATATGCTGAAGCTGATCCAGCTTGGACTTACGTTCTCGGATGAGAACGGGAATTTGCCTACTTGTGGAACGGAAACTCCCTGCATCTGGCAGTTTAACTTTAGGGAGTTTAATGTCAGCGAGGATATCTTCGCGAGTGACTCGATCGAGCTGCTGCGCCAGAGCGGGATTGATCTCAAGAAGATCAATGAGAAGGGGATTGATGTGAGCCGGTTCGGGGAGCTTCTGATGTCGTCGGGGGTTGTGTTGAATGATAATGTGCACTGGGTTACGTTTCACAGCGGTTATGATTTCGGGTATCTGCTGAAGCTGTTGACGTGCCGTGTGTTGCCTGAGTCGCAGGCCGGGTTTTTTGAGCTGATCAAGATTTATTTCCCCATGTTGTATGATATTAAGCATCTGATGAAGTTCTGCAACAATCTCCATGGTGGATTGAACAAGCTCGCCGAGTTGTTGGAGGTGGATAGGGTTGGTATGTGCCATCAAGCCGGATCGGATAGTTTACTCACTTCGTGTACATTTAGGAAGTTGAGGGATACATACTTCAGTGGCTCCACAGAGAAATATGCTGGTGTGTTGTATGGTTTAGGTGTTGAGAACAAGACAGACTAA 819 0.4579 MSILQKGDSVQIREVWNDNLEEEFALIREIVDDFSYVAMDTEFPGVVLRPLGNFKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTETPCIWQFNFREFNVSEDIFASDSIELLRQSGIDLKKINEKGIDVSRFGELLMSSGVVLNDNVHWVTFHSGYDFGYLLKLLTCRVLPESQAGFFELIKIYFPMLYDIKHLMKFCNNLHGGLNKLAELLEVDRVGMCHQAGSDSLLTSCTFRKLRDTYFSGSTEKYAGVLYGLGVENKTD* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3925 272 Gene3D - 1 269 IPR036397 GO:0003676
Lja1g3925 272 SUPERFAMILY Ribonuclease H-like 5 267 IPR012337 -
Lja1g3925 272 PANTHER CCR4-ASSOCIATED FACTOR 1 HOMOLOG 10-RELATED 1 271 - -
Lja1g3925 272 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 1 271 IPR039637 GO:0004535|GO:0030014
Lja1g3925 272 Pfam CAF1 family ribonuclease 15 136 IPR006941 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3925 Lja-Chr1 49770023 49771592 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3925 K12581 - gmx:100785970 508.449