Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3900 ATGTCTGTGGAGTCACCGCTTATGATTTCAGTCATATTGGTCATGCTCGTGTTTATGTCAATTTCGATCTTCTTTACAGGCAGATATTTTAAGCATTTGGGATTTGAAGTGTGTTATGTTCGCAATTTTACTGATGTAGATGACAAGATAATTGCTAGATCAAAGGAGTTAGGAGAAGACCCAATCAGTTTGAGCAGGCGTTTTTGTGAAGAGTTCTGTCAAGACATGGAGACTCTTAATTGTTTGCCTCCTTCTGAGCAACCAAAAGTCTCAGACCACATGCCCCAAATCATTGATATGATTGAGAAGATTCTTAATAATGGGTATGCCTACATCATTGATGGGGATGTATACTTTGATGTAAAAAAATTCCCAGAATATGGAAAATTATCCAGTCGAAATCTAGAAGATAATCGAGCTGGTGAGAGGGTTGCTGTTGACACAAGGAAGAAAAATCCTGCTGATTTTGCTCTTTGGAAGTCTGCAAAGCCAGGAGAGCCATTTTGGGAGACTCCCTGGGGTCCTGGAAGACCTGGGTGGCATATTGAATGTAGTGCTATGAGTGCAACTTATCTTGGATACTCTTTTGACATCCACGGTGGAGGGATTGACCTTGTGTTTCCTCACCATGAAAATGAAATTGCTCAGAGTTGTGCTGCTTGTAAGAAAAGTGATATAAGCCTATGGATGCACAATGGTTTTGTCACCATTGACTCTGTGAAGATGTCTAAATCCCTGGGAAATTTTTTCACAATACGGCAGGTTGTAGATGTTTACCATCCTTTGGCTTTGAGATATTTTTTGATGGGCGCCCATTATAGATCTCCTATTAACTACTCTCATGTCCAGCTTGAAAGTGCTTCAGACCGTGTTTATTATATATACGAGACATTACATGAATGTGAAAGGTTCCTCAATCAGCAAGATCGGACAGTTAGGAAGGATAACATCCCACCAGATACTTTGAGTATTATTAATAAATTGCATGAAGTTTTTTTGACCTCAATGTCTGATGATCTTCACACTCCGGTTGTATTGGCGGGACTGTCTGACCCATTAAAATCAATTAATGACTTGCTGCATACTCGTAAGGGGAAAAAACAACAATTTCGAATAGAATCGCTTGCAGCTTTGGAGAAGAGCATCGAGGATGTCCTTACTGTTTTAGGGCTTAAGCCTTCAAGCTATTCTGAGATATTGGAGCAACTTAAGGAAAAAGCTTTAAAGCGCGCAAACATAACCGAAGATGAAGTGTTGAAGAAAATTGAAGGACGGGATGCTGCTAGATTGCAAAAGGAGTATGCAAAATCAGATGCAATAAGGAAGGATTTGGCTAATGTTGGCATTGCTCTTATGGACAGTCCAAATGGCACAACTTGGAGGCCTTCCATTCCTGTTCCACTTCAAGAGTTGCTCTTAGCCAAATCAGAATAA 1434 0.4017 MSVESPLMISVILVMLVFMSISIFFTGRYFKHLGFEVCYVRNFTDVDDKIIARSKELGEDPISLSRRFCEEFCQDMETLNCLPPSEQPKVSDHMPQIIDMIEKILNNGYAYIIDGDVYFDVKKFPEYGKLSSRNLEDNRAGERVAVDTRKKNPADFALWKSAKPGEPFWETPWGPGRPGWHIECSAMSATYLGYSFDIHGGGIDLVFPHHENEIAQSCAACKKSDISLWMHNGFVTIDSVKMSKSLGNFFTIRQVVDVYHPLALRYFLMGAHYRSPINYSHVQLESASDRVYYIYETLHECERFLNQQDRTVRKDNIPPDTLSIINKLHEVFLTSMSDDLHTPVVLAGLSDPLKSINDLLHTRKGKKQQFRIESLAALEKSIEDVLTVLGLKPSSYSEILEQLKEKALKRANITEDEVLKKIEGRDAARLQKEYAKSDAIRKDLANVGIALMDSPNGTTWRPSIPVPLQELLLAKSE* 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3900 477 Gene3D - 280 462 - -
Lja1g3900 477 Pfam tRNA synthetases class I (C) catalytic domain 26 287 IPR032678 -
Lja1g3900 477 PANTHER CYSTEINE--TRNA LIGASE, CHLOROPLASTIC/MITOCHONDRIAL 27 467 - -
Lja1g3900 477 TIGRFAM cysS: cysteine--tRNA ligase 25 461 IPR015803 GO:0004817|GO:0005524|GO:0006423
Lja1g3900 477 Coils Coil 397 417 - -
Lja1g3900 477 SUPERFAMILY Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 318 461 IPR009080 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Lja1g3900 477 PANTHER CYSTEINYL-TRNA SYNTHETASE 27 467 IPR024909 -
Lja1g3900 477 SUPERFAMILY Nucleotidylyl transferase 27 287 - -
Lja1g3900 477 Hamap Cysteine--tRNA ligase [cysS]. 1 463 IPR015803 GO:0004817|GO:0005524|GO:0006423
Lja1g3900 477 PRINTS Cysteinyl-tRNA synthetase signature 166 184 IPR024909 -
Lja1g3900 477 PRINTS Cysteinyl-tRNA synthetase signature 37 46 IPR024909 -
Lja1g3900 477 PRINTS Cysteinyl-tRNA synthetase signature 197 218 IPR024909 -
Lja1g3900 477 Gene3D HUPs 20 279 IPR014729 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3900 Lja-Chr1 49192274 49197462 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3900 K01883 - gmx:100786700 828.935