Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3894 ATGAAGCACACTTCATCAGAGGCGGTTCCGTCGCTATCCGCCGCGCCGTCTTTCACGGAGGCGGCGGCGGCGGCGACGTCGTCATCGTCATCCTCAGCGGCGGCGGAGGACCTTGTTTTGGGGTCAAGAGACGGTGGCGGCGCGCAGGAGACGGTGGCCGTCGATCGACGAGGAGAGTACTCCGCCGTGTGCAGATGGACGGTGCACAATTTCCCGAGGATAAAAGCTAGGGCACTGTGGAGCAAGTACTTCGAGGTAGGAGGCTACGATTGCCGCCTCTTGATATACCCTAAGGGTGATTCTCAAGCTCTTCCAGGTTACATCTCCATCTACCTCCAAATCATGGACCCTCGCGGCACCTCTTCTTCCAAATGGGACTGTTTCGCGAGTTATCGCTTGGCGATTGTTAACCTCGTTGATGATTCCAAGAGCATTCATCGCGATTCATGGCATAGATTCTCTAGTAAGAAGAAATCGCATGGTTGGTGTGATTTCACGCCTTCTTCCACTGTTTTCGATCCCAAATTGGGGTATCTGTTCAACACTGATTCTGTTTTGATCACTGCTGATATTCTTATTCTTAACGAGTCGGTTAGTTTTAGTCGCGATAACAATGAGTTGCAGTCCTCGTCGTCGTCTTCATCGTTGTCTTCGAGTTCTTCGGTTGTTGTGGGTCCTGTGAGTGATGTTTTGAGTGGGAAGTTCACCTGGAAGGTGCATAATTTTAGCTTGTTTAAGGATATGATCAGGACACAGAAGATAATGAGCCCGGTTTTTCCAGCTGGGGAGTGTAATTTGAGGATTAGTGTGTACCAGAGCACGGTGAATGGGGTTGATCATCTTTCAATGTGTTTGGAGAGCAAGGATACTGATAAGACTGCGGCGCTGTCTGATAGGAGTTGCTGGTGTTTGTTTAGAATGTCTGTGTTGAACCAGAAGCCCGGTTCGAATCACACGCATAGGGACTCATATGGTCGGTTTGCGGCTGATAATAAGAGTGGTGATAACACCAGCTTGGGGTGGAATGATTATATGAAGATGTCGGATTTCGTTGGGTCTGATTCAGGGTTCCTGGTGGATGACACTGCGGTTTTTAGTACCTCATTTCATGTGATCAAGGAGTTTAGCAGTTTTTCCAAGAATGGGGCTGTGATTGCTGGGAGAAGTGGAAGTGGTGCGAGGAAGTCAGATGGTCATATTGGAAAGTTCACTTGGAGGATTGAAAATTTCACAAGGTTGAAAGATTTACTGAAGAAGAGGAAAATTACGGGTCTTTGTATCAAGAGCCGGAGGTTTCAGATTGGTAATAGGGATTGTCGCCTTATTGTGTATCCACGAGGGCAGTCTCAGCCACCATGTCACCTTTCAGTGTTTCTTGAAGTTACAGACTCAAGAAATACTTCCAGTGATTGGAGTTGTTTTGTTAGTCATCGTTTGTCAGTTGTGAACCAGAGAATGGAGGATAAATCTGTCACCAAGGAATCTCAGAACCGCTACTCCAAAGCTGCAAAGGATTGGGGATGGCGTGAATTTGTGACCCTGACAAGTCTCTTCGATCAAGATTCAGGTTTTCTTGTCCAGGACACTGTCATATTTTCAGCTGAAGTTCTTATATTGAAAGAGACATCAATAATGCAGGATTTTGCTGAGCATGATTCCGAGCCAAGCAGCAGTGGCTCCTCTATTGATAGCCATGGGAAAAGAAGCTCGTTTACATGGAAAGTGGAGAATTTCCTTTCCTTTAAGGATATAATGGAAACTCGAAAAATCTTTAGTAAATTCTTTCAGGCTGGTGGATGCGAGCTTCGCATTGGTGTGTATGAATCATTTGACACCATATGCATATATTTGGAGAGTGACCAGGCTGTTGGTAGTGATCCTGATAAAAACTTCTGGGTCAGATACAGAATGGCTGTTGTGAATCAAAAGAACCCGGCCAAGACTGTGTGGAAAGAATCTTCTATCTGCACAAAGACATGGAATAATTCTGTTTTGCAATTCATGAAGGTGTCTGATATGTTAGAAGCTGATGCTGGCTTTCTTGTCCGTGACACTGTTGTTTTTGTATGTGAAATATTGGATTGCTGCCCTTGGTTTGAGTTTTCAGATTTAGAGGTTTTAGCTTCGGAGGATGATCAAGATGCATTGACAACTGATCCTGATGAACTGCTCGACTCTGAAGACAGTGAAGGGATAAGTGGAGATGAGGAAGATATATTCAGAAATCTTCTTTCTCGAGCTGGATTTCATTTAACATATGGAGATAATCCTTCACAGCCACAGGTTACTTTAAGAGAGAAACTTTTGATGGATGCTGGTGCTATTGCTGGGTTTCTGACCGGACTACGGGTTTATCTTGATGATCCTGCAAAAGTTAAGCGTTTACTTCTACCTACCAAGCTCTCTGGTAGTTGTGATGGGAAGAAGACCACCAAGGCTGATGAGTCTTCCCCGAGTTTAATGAATTTGCTGATGGGAGTTAAAGTATTACAGCAAGCAATCGTTGATTTACTATTGGATATAATGGTTGAGTGCTGCCAACCTTCTGAAGTGGGCCCTGTTTCTGATTCTGTTGATGCATGCGCAAAACCTTCTCCTGACACTAATGGAGCTGCTAGTCCTCTTGTCTGTGATAGAGAAAATAGAGTAGCGAAGTCTGCACAAACTCCTGTTCATGAGAGATTGGATTCTACTGTGGAAGAAAGCAGTAGTACATCTGCTGTTCAGAGCTCTGATTTAAATAGTAATGGTATTCAGGAAAAAGCTCTTCCTGGACAGCCCACTTGTCCGCCAGAAACATCTGCTGCCAGTTCGGAAAATGCGTCTTTCCGGTCAAAGACCAAGTGGCCAGAACAATCTGAGGAGCTCTTAGGTTTGATTGTAAACTCACTAAGAGCTTTAGATGGGGCTGTTCCGCAAGGCTGTCCCGAGCCAAGACGGCGACCTCAGTCTGCACAGAAAATTGCTCTTGTATTGGACAAGGCTCCTAAGCATTTGCAAGCGGACCTTGTTGCTCTGGTTCCCAAATTGGTTGAGCAGTCGGAGCATCCAGTTGCTGCATGTGCACTTCTTGAGCGACTTCAAAAGCCAGATGCAGAACCTGCATTACGAATACCTGTTTTTGGGGCTCTTAGTCAATTGGAGTGTGGGAGCGAAGTGTGGGAGCGTATTCTGTTTCAGTCATTTGAACTTTTAACAGACTCAAATGAAGAACCCCTCACTGCGACTATAGATTTTATATTCAAAGCGGCATCTCAATGTCAACACCTCTCTGAAGCAGTTAGGTCGGTTCGCGTCAGGCTAAAAAATCTAGGCCTCGAGGTGTCACCTTGTGTCCTTGATTTTTTGAGCAAGACTATAAATAGTTGGGGGGATGTTGCTGAAACCATACTTAGGGATATTGACTGTGATGATGATTATGGGGATAGTTTCCCTGCTCTGCCATGTGGGATTTTTGTATTTGGTGAACATGGCTCTGCTCCTACTGGAGTGCATGTGGTTGATGAGCAGACTTTTCGTGCTAGTCGTCATTTTTCTGATATTTATATACTGTTTGAGATGTTATCTATTCCTTGTCTTGCTGTTGAAGCTTCTCAAACATTCGAGAGAGCTGTAGCTCGAGGTGCAATAGGTGCTCAGTCTGTAGCTCTGGTATTGGAAAGTCGTCTTTCTCAAAGATTGAACAATAATGCTAGATTTATTTCTGAAAACTTTCAACATTCTGATGGTGCGACGGAGGTAGATGCTTGTGAGCAATTGGGTGTTCAAAGGGATGATTTTACTTCAGTTCTTGGTCTTGCTGAAACGCTGGCCCTCTCCAGAGACCCATGTGTGAAAGAATTTGTGAAATTGCTCTACATGATACTCTTCAGATGGTATGCTAATGAATCTTATCGGGGGAGGATGCTGAAGAGGCTTGTTGACCGTGCCACCAGCACTTCTGATAATGGTCGTGAAGTAGATTTTGATTTGGATATCTTGGTTACTTTGGTCTGCGAGGAGCAGGAGATTATTAGGCCTGTTTTGAGTATGATGCGTGAAGTTGCTGAACTTGCAAATGTTGATCGGGCTGCTCTATGGCACCAGCTATGCTCTAGTGAAGATGAAATTATTCGCATCCGTGAGGAAAGCAAAACTGAGATTTCTAATATGGCTAAGGAAAAAGCTACTATATCACAAAAGCTGAGTGAATCTGAGGCCACAAGCAATCGTCTCAAGTCTGAAATGAGAGCTGAGTTAGACCGGTTTTCTCGGGAGAAGAAGGAACTTACAGAACAAGTTCAAGAAATTGAGAGTCAGCTTGAGTGGCTTCGCTCGGAGAGGGATGATGAAAAAGTAAAGCTCTCTGCTGAGAAGAAAGTTCTCCAAGACCGTTTACATGATGCAGATACCCAACTTTCTCAATTGAAGTCTCGGAAACGTGATGAATTAAAGAAAGTGGTGAAGGAGAAAAATGCACTAGCTGAAAGATTGAAGAATGCTGAAGCTGCTCGGAAGAGATTTGATGAAGAATTGAAAAGATTTGCAACAGAGAACGTGACTCGGGAAGAAATCCGTCAATCACTTGAGGATGAAGTTCGTAGATTGACTCAAACAGTTGGACAAACTGAGGGAGAAAAACGGGAAAAGGAAGAGCAGATTGCTAGGTGCGAAGCATATATTGATGGCATGGAATCGAAGTTGCAGGCGTGCCAGCAATATATTCACACACTTGAGCACTCACTCCAGGAGGAAATGTCTCGACATGCCCCTCTATATGGTGCTGGTCTGGAAGCTCTATCAATGAAAGAGTTGGAAACAATATCACGAATTCATGAAGAAGGGCTAAGGCAGATCCATGCCCTTCAGCAGCGTAAAGGGAGTCCGGCTGGGAGTCCTCTTTTGACTCCCCATGCTCACCCTCACAACCATGGATTATATCCGGCTGCGTCACCCCCAATGGCTGTGGGGCTGCCTCCCTCAATCATCCCAAATGGCGTTGGGATCCATAGCAACGGGCATGTGAATGGTGCTGTTGGCCCCTGGTTTAACCACCCTTGA 5040 0.4502 MKHTSSEAVPSLSAAPSFTEAAAAATSSSSSSAAAEDLVLGSRDGGGAQETVAVDRRGEYSAVCRWTVHNFPRIKARALWSKYFEVGGYDCRLLIYPKGDSQALPGYISIYLQIMDPRGTSSSKWDCFASYRLAIVNLVDDSKSIHRDSWHRFSSKKKSHGWCDFTPSSTVFDPKLGYLFNTDSVLITADILILNESVSFSRDNNELQSSSSSSSLSSSSSVVVGPVSDVLSGKFTWKVHNFSLFKDMIRTQKIMSPVFPAGECNLRISVYQSTVNGVDHLSMCLESKDTDKTAALSDRSCWCLFRMSVLNQKPGSNHTHRDSYGRFAADNKSGDNTSLGWNDYMKMSDFVGSDSGFLVDDTAVFSTSFHVIKEFSSFSKNGAVIAGRSGSGARKSDGHIGKFTWRIENFTRLKDLLKKRKITGLCIKSRRFQIGNRDCRLIVYPRGQSQPPCHLSVFLEVTDSRNTSSDWSCFVSHRLSVVNQRMEDKSVTKESQNRYSKAAKDWGWREFVTLTSLFDQDSGFLVQDTVIFSAEVLILKETSIMQDFAEHDSEPSSSGSSIDSHGKRSSFTWKVENFLSFKDIMETRKIFSKFFQAGGCELRIGVYESFDTICIYLESDQAVGSDPDKNFWVRYRMAVVNQKNPAKTVWKESSICTKTWNNSVLQFMKVSDMLEADAGFLVRDTVVFVCEILDCCPWFEFSDLEVLASEDDQDALTTDPDELLDSEDSEGISGDEEDIFRNLLSRAGFHLTYGDNPSQPQVTLREKLLMDAGAIAGFLTGLRVYLDDPAKVKRLLLPTKLSGSCDGKKTTKADESSPSLMNLLMGVKVLQQAIVDLLLDIMVECCQPSEVGPVSDSVDACAKPSPDTNGAASPLVCDRENRVAKSAQTPVHERLDSTVEESSSTSAVQSSDLNSNGIQEKALPGQPTCPPETSAASSENASFRSKTKWPEQSEELLGLIVNSLRALDGAVPQGCPEPRRRPQSAQKIALVLDKAPKHLQADLVALVPKLVEQSEHPVAACALLERLQKPDAEPALRIPVFGALSQLECGSEVWERILFQSFELLTDSNEEPLTATIDFIFKAASQCQHLSEAVRSVRVRLKNLGLEVSPCVLDFLSKTINSWGDVAETILRDIDCDDDYGDSFPALPCGIFVFGEHGSAPTGVHVVDEQTFRASRHFSDIYILFEMLSIPCLAVEASQTFERAVARGAIGAQSVALVLESRLSQRLNNNARFISENFQHSDGATEVDACEQLGVQRDDFTSVLGLAETLALSRDPCVKEFVKLLYMILFRWYANESYRGRMLKRLVDRATSTSDNGREVDFDLDILVTLVCEEQEIIRPVLSMMREVAELANVDRAALWHQLCSSEDEIIRIREESKTEISNMAKEKATISQKLSESEATSNRLKSEMRAELDRFSREKKELTEQVQEIESQLEWLRSERDDEKVKLSAEKKVLQDRLHDADTQLSQLKSRKRDELKKVVKEKNALAERLKNAEAARKRFDEELKRFATENVTREEIRQSLEDEVRRLTQTVGQTEGEKREKEEQIARCEAYIDGMESKLQACQQYIHTLEHSLQEEMSRHAPLYGAGLEALSMKELETISRIHEEGLRQIHALQQRKGSPAGSPLLTPHAHPHNHGLYPAASPPMAVGLPPSIIPNGVGIHSNGHVNGAVGPWFNHP* 1680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3894 1679 Coils Coil 1519 1560 - -
Lja1g3894 1679 MobiDBLite consensus disorder prediction 884 949 - -
Lja1g3894 1679 PANTHER TRAF-LIKE FAMILY PROTEIN 30 1678 - -
Lja1g3894 1679 SUPERFAMILY TRAF domain-like 401 542 - -
Lja1g3894 1679 MobiDBLite consensus disorder prediction 885 899 - -
Lja1g3894 1679 MobiDBLite consensus disorder prediction 1390 1410 - -
Lja1g3894 1679 CDD MATH 65 191 IPR002083 GO:0005515
Lja1g3894 1679 Pfam MATH domain 432 538 IPR002083 GO:0005515
Lja1g3894 1679 Pfam MATH domain 581 688 IPR002083 GO:0005515
Lja1g3894 1679 Pfam MATH domain 70 193 IPR002083 GO:0005515
Lja1g3894 1679 SMART math_3 405 517 IPR002083 GO:0005515
Lja1g3894 1679 SMART math_3 570 673 IPR002083 GO:0005515
Lja1g3894 1679 SMART math_3 63 171 IPR002083 GO:0005515
Lja1g3894 1679 SMART math_3 237 350 IPR002083 GO:0005515
Lja1g3894 1679 CDD MATH 570 692 IPR002083 GO:0005515
Lja1g3894 1679 SUPERFAMILY TRAF domain-like 60 198 - -
Lja1g3894 1679 Coils Coil 1406 1511 - -
Lja1g3894 1679 ProSiteProfiles MATH/TRAF domain profile. 232 369 IPR002083 GO:0005515
Lja1g3894 1679 MobiDBLite consensus disorder prediction 900 922 - -
Lja1g3894 1679 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 47 197 IPR008974 GO:0005515
Lja1g3894 1679 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 228 375 IPR008974 GO:0005515
Lja1g3894 1679 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 392 545 IPR008974 GO:0005515
Lja1g3894 1679 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 557 694 IPR008974 GO:0005515
Lja1g3894 1679 ProSiteProfiles MATH/TRAF domain profile. 61 191 IPR002083 GO:0005515
Lja1g3894 1679 ProSiteProfiles MATH/TRAF domain profile. 568 692 IPR002083 GO:0005515
Lja1g3894 1679 PANTHER TRAF-LIKE FAMILY PROTEIN 30 1678 - -
Lja1g3894 1679 SUPERFAMILY TRAF domain-like 230 375 - -
Lja1g3894 1679 SUPERFAMILY TRAF domain-like 569 693 - -
Lja1g3894 1679 CDD MATH 233 365 IPR002083 GO:0005515
Lja1g3894 1679 CDD MATH 401 536 IPR002083 GO:0005515
Lja1g3894 1679 MobiDBLite consensus disorder prediction 930 947 - -
Lja1g3894 1679 ProSiteProfiles MATH/TRAF domain profile. 400 536 IPR002083 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3894 Lja-Chr1 49099279 49108744 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3894 - - ccaj:109798115 3021.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3894 1 49099279 49108744 Lja1g3894 1 49099279 49108744 ECH