Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3892 ATGCAGAGACGAAGTCCTCCCAAGCACAGGCACGATGGGACTTCGCCGCTGCCTCTCGGCATGGATTGGAGTCCTGCACCCAGAAAATGGGATGGGCGGGATACAATATGGCCCCATGATCATCGTAGTGGTTGGAGTTATTGTGTTATCGTACCTTCGTGGGTCTTCGTTCCAAAGTCGAAGAATTCAGATCCCATAGTGTTCTACAGGGTTCAAGTTGGAGTACAGTCACCAGAAGGGACTACAAGGCTCCATGGAGTACTAAGAAGGTTCAATGATTTTCTAAGGTTGTTTGCTGATGTTAAAAAGGAATTTCCCAGGAAAAGTATCCCTCCAGCACCACCCAAGGGACTGTTGCGATTGAAAAGCCGAGCCTTGCTGGAAGAGAGAAGGCGCTCTTTGGAGGAATGGATCACCAAACTATTGTCTGACATTGATATATCAAGATGTGCTGCAGTGGCATCATTTTTTGAGCTAGAAGCTGCTGCAAGATCTTCATTCCAAGATGCAAGCCAGCAGAATTCAGAAACAGAACCTGATGCCAATAACAGAGCTTATTCAATGCAATCACCTCTCCATTCGAGCTTATCATTAGCTGCTGGCAGTTCATCTGTTGCCTCAGATTGTTGCAGTGATACCGCATATGAGCCATCTGAAACAGGAACTTCGAGAATTGGACAGGACGATAATTCCGAAGTCGGTACAGATGATCTAACAATGGATGAAGATATGGTGAATCCAATAGAAAAGCTTGTGAAATATGGCATATCAAATATTGATGAGGGTTTGTTTATGGGCCAGACTATTCTAGAGCAATTGGAAGGCCTTCCTAGGCATAAAATAAATGCCAGACACATGAACTCTGTTACTGAGAAGGGAAAAAATAATGGTAATTCATATGATTCTTCACATTTACCTAATAATACGATGGAGCTTTTCTCTGAGCCTGGGCATGCTAGTGTTATTGGTCATATTCGTAAGCTTTCAAATGAGAGTGCTGGAAGTGATGGAAGCTCCATACGAGGTAGTGGCATGACTAATTTTGGGATTCCAAATTCATCTGGTGATAGCTCTCTTGATCTTCCTGGATATGCTTCAGTTTCAAGAGAAACAGATATAATGGACCCCACAAAGTTGAAGTCTACTGGTGATGCTCAGTTAGTCCTTCCACAAGATCAACGCAATAAATTAAACAGGGTTCTTTCAACCATGCAGAGAAGGCTAGTCACTGCAAAAACTGATATGGAGGACCTTATAGTTAGATTAAATCAAGAAATGGCTGCAAAGGATTTTCTTGCTACGAAGGTCAAGGATTTGGAAGTTGAACTTGAAACTAGCAAACAGAAAAATAAGGAAAACTTGCAGCAGGCTATTCTGATTGAGAGGGAAAGGTTTACCCAAATGCAGTGGGATATGGAGGAACTTCGACGAAAATCATTGGAAATGGAGATGAAACTAAAGTCTGAATCGGTTGGAAATTCTAGTCAAGATGATGTGCTGATGCAGAATTTAGATGCTGCTAAGAAGCAGCTGGAGAGTTTGTCAAAACAGTATGGAGAGCTAGAAGCGAAATCCAAAGCAGATGTAAAAGTTCTGGTTAAAGAGGTCAAATCTCTCCGTAAGTCCCAAACAGAATTGAAGAAGGAACTTGGTGGGTCGATAAAGGATAAGTGTGAAGCTGAGAAACTACTACTTCACGAAAGAGAGAAGCGGGAACAGGCAGAAGCTGGTTGGAGAGAACTGACAGAGAAATGCAAGCTTCTTTTTAGCCAGCTTCAAGAATGCAATGTCAGTCTTCCTTATGATGACGAAGATAGGAAAATCATGAACCCATCATCATTACATGATGCTTCTAATCGATTAACAACAGCTGATGATCAAATTGACATCCTACTAGCAGAGGTAGAAAATTTAGAGAAGGATTGCGGAAGTGCAGCTTCCTATGTAGATAAAAGCAATGGCATAAAAGATGGTGTAATCTGTGATGATGAAATGAGAAAGATCATAGCAGATTTGTTCATCGATAACGTTAGATTGAGAAAACAGACAAACCGCATTACAAGGCATGCTCTCAAATTGGAAACAGCAGCAAGTGATGATACTCCTTCAATGGAAACTGTAACAAATATATAG 2133 0.4158 MQRRSPPKHRHDGTSPLPLGMDWSPAPRKWDGRDTIWPHDHRSGWSYCVIVPSWVFVPKSKNSDPIVFYRVQVGVQSPEGTTRLHGVLRRFNDFLRLFADVKKEFPRKSIPPAPPKGLLRLKSRALLEERRRSLEEWITKLLSDIDISRCAAVASFFELEAAARSSFQDASQQNSETEPDANNRAYSMQSPLHSSLSLAAGSSSVASDCCSDTAYEPSETGTSRIGQDDNSEVGTDDLTMDEDMVNPIEKLVKYGISNIDEGLFMGQTILEQLEGLPRHKINARHMNSVTEKGKNNGNSYDSSHLPNNTMELFSEPGHASVIGHIRKLSNESAGSDGSSIRGSGMTNFGIPNSSGDSSLDLPGYASVSRETDIMDPTKLKSTGDAQLVLPQDQRNKLNRVLSTMQRRLVTAKTDMEDLIVRLNQEMAAKDFLATKVKDLEVELETSKQKNKENLQQAILIERERFTQMQWDMEELRRKSLEMEMKLKSESVGNSSQDDVLMQNLDAAKKQLESLSKQYGELEAKSKADVKVLVKEVKSLRKSQTELKKELGGSIKDKCEAEKLLLHEREKREQAEAGWRELTEKCKLLFSQLQECNVSLPYDDEDRKIMNPSSLHDASNRLTTADDQIDILLAEVENLEKDCGSAASYVDKSNGIKDGVICDDEMRKIIADLFIDNVRLRKQTNRITRHALKLETAASDDTPSMETVTNI* 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3892 710 MobiDBLite consensus disorder prediction 167 187 - -
Lja1g3892 710 MobiDBLite consensus disorder prediction 1 25 - -
Lja1g3892 710 PANTHER PX DOMAIN-CONTAINING PROTEIN EREL1-RELATED 1 703 IPR044588 GO:0015031
Lja1g3892 710 Coils Coil 621 641 - -
Lja1g3892 710 Coils Coil 529 549 - -
Lja1g3892 710 Coils Coil 429 456 - -
Lja1g3892 710 MobiDBLite consensus disorder prediction 331 355 - -
Lja1g3892 710 Gene3D - 51 188 IPR036871 GO:0035091
Lja1g3892 710 MobiDBLite consensus disorder prediction 330 355 - -
Lja1g3892 710 Coils Coil 497 524 - -
Lja1g3892 710 Pfam PX domain 87 158 IPR001683 GO:0035091
Lja1g3892 710 PANTHER PX DOMAIN-CONTAINING PROTEIN EREL1-RELATED 1 703 - -
Lja1g3892 710 ProSiteProfiles PX domain profile. 47 164 IPR001683 GO:0035091
Lja1g3892 710 SUPERFAMILY PX domain 41 160 IPR036871 GO:0035091
Lja1g3892 710 MobiDBLite consensus disorder prediction 209 233 - -
Lja1g3892 710 MobiDBLite consensus disorder prediction 209 238 - -
Lja1g3892 710 SMART PX_2 55 160 IPR001683 GO:0035091
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3892 Lja-Chr1 49073176 49082556 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3892 - - lja:Lj1g3v1888530.1 1226.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3892 1 49073176 49082556 Lja1g3892 1 49073176 49082556 ECH