Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3886 ATGGCTTCGAGCACGATTCGGAAGGCGATTGGTGCGGTGAAGGACCAGACCAGCATAGGGATAGCCAAGGTGGCGAGCAACATGGCGCCGGAGCTTGAGGTGGCGATTGTGAAGGCGACGAGCCACGATGAGGATCCGGCGAGTGAGAAGTACGCGCGGGAGGTTTTGAATTTGATGTCATACTCGCGCGGCTATGTTCACGCGTGTGTGTCGGCGGTGTCTAAGAGATTGGGGAAGACGAGGGACTGGATCGTGGCTTTGAAGGCGCTGATGTTGACTCACCGGTTGATGAATGAGGGTCCTCCGTTGTTCCAGGAGGAGATCGTGTATGCTACACGGAGGGGGACTAGGCTGCTTAATATGTCTGATTTCAGGGATGAGGCTCACTCCAGCTCTTGGGATCACTCTGCTTTTGTCAGGACCTATGCTTTGTATCTGGATCAGCGCCTCGAGATGATGCTTTTCGACAGGAAGAGTAGCCTTGGTGGAGCTGGTGCTGGTAGTGGTGGTAGTGGTGGTGGTGGTGGTGGTGGTGGAAGTTCTGCTGATGATAGGTTTGGTGGGAGAGACAATTTCAGGTCGCCGCCTTATGAGTATGAATCAGGAGGGTTTAGAGGGGAAAGCGGGTACGGGAATAATGGGATGAGGAGGACGAGATCGTTTGGGGATATGACTGAAACGGCGGGGCGCGAGGACAACAACAAGAAGGTTGTGACTCCCCTCAGGGATATGAAGCCAGAGAGGATTTTTGCTAAGATGGGTCATTTGCAGAGGCTGTTGGACCGTTTCTTGGCTTGCAGGCCTACTGGGTTGGCTAAGAATAGCAGGATGATTTTGATTGCCCTGTATCCGGTTGTTAAAGAGAGCTTTCAGTTGTATGCTGATATATGTGATGCTTTGGCTGTGTTGCTTGACAAGTTCTTTGATATGGAGTACACGGATTGCGTGAAGGCCTTTGATGCTTATGCAAGTGCGGCTAAGCAGATTGATGAGCTGGTTGCATTCTATAATTGGTGCAAGGATACGGGTGTGGGGAGGTCCTCGGAGTACCCTGAAGTTCAGAGGATTACTGCTAAGTTGCTGGAGACATTGGAGGAGTTTGTGAGGGATAGGGCCAAGAGGCCGAAAAGTCCTGAGAGGAAAGAGGAACCAGTACTGCAGATTGAACAGCCAGAAGAGGAGCCTGTACCGGATATGAACGAAATCAAGGCACTGCCTCCACCTGAGAATTATACCCCGCCACCTCAACCTGAGCCAGAGCCTAAACCACAACCACAAGTTCAGGAGGACTTGGTGAATCTGAGGGAGGATGCAGTCACTGCAGATGACCAGGGCAATAGATTTGCTTTGGCACTCTTTGCTGGTGCACCAGCTAATGGAAATGGATCATGGCAAGCCTTTCCCTCAAACGGACAGCCGGAAGTGACTTCAGCTTGGCAAAACCCAGCGGCAGAACCTGGGAAAGCCGATTGGGAATTGGCATTGGTAGAGACTGCTAGCAATTTGGCAAACCAGAAGGCAGCTTTAGGTGGTGGCCTTGATCCCTTATTGTTGAATGGCATGTATGATCAAGGAATGGTGAGGCAGCATGTCAGCACTGCCAATCTGAGTGGAGGAAGTGCAAGTAGCGTGGCATTGCCAGGACCGGGGAAGACCACAACACCTGTTTTAGCTCTTCCAGCCCCAGATGGATCGGTGCAGCCAGTTAATCAGGATCCATTTGCAGCATCATTGACCATTCCACCCCCTTCCTATGTGCAAATGGCTGATATGGAGAAGAAGCAGCACTTGCTCGTGCAGGAGCAACAGGTTTGGAATCAGTATGCGAGGGATGGGATGCAAGGCCAATCTAGCTTGGCCAAATTGAACGGTGCCGGATACTATCCTGGAGGTCCTATGCCAATGATGCCTTATGGGATGCCCCCAGTCAATGGAATGGGACCTCCAACCGGGTATTACCAAGCTCCTTACTGA 1974 0.5172 MASSTIRKAIGAVKDQTSIGIAKVASNMAPELEVAIVKATSHDEDPASEKYAREVLNLMSYSRGYVHACVSAVSKRLGKTRDWIVALKALMLTHRLMNEGPPLFQEEIVYATRRGTRLLNMSDFRDEAHSSSWDHSAFVRTYALYLDQRLEMMLFDRKSSLGGAGAGSGGSGGGGGGGGSSADDRFGGRDNFRSPPYEYESGGFRGESGYGNNGMRRTRSFGDMTETAGREDNNKKVVTPLRDMKPERIFAKMGHLQRLLDRFLACRPTGLAKNSRMILIALYPVVKESFQLYADICDALAVLLDKFFDMEYTDCVKAFDAYASAAKQIDELVAFYNWCKDTGVGRSSEYPEVQRITAKLLETLEEFVRDRAKRPKSPERKEEPVLQIEQPEEEPVPDMNEIKALPPPENYTPPPQPEPEPKPQPQVQEDLVNLREDAVTADDQGNRFALALFAGAPANGNGSWQAFPSNGQPEVTSAWQNPAAEPGKADWELALVETASNLANQKAALGGGLDPLLLNGMYDQGMVRQHVSTANLSGGSASSVALPGPGKTTTPVLALPAPDGSVQPVNQDPFAASLTIPPPSYVQMADMEKKQHLLVQEQQVWNQYARDGMQGQSSLAKLNGAGYYPGGPMPMMPYGMPPVNGMGPPTGYYQAPY* 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3886 657 ProSiteProfiles ENTH domain profile. 24 160 IPR013809 -
Lja1g3886 657 MobiDBLite consensus disorder prediction 369 427 - -
Lja1g3886 657 Pfam ANTH domain 226 370 IPR011417 GO:0005543
Lja1g3886 657 Pfam ANTH domain 31 153 IPR011417 GO:0005543
Lja1g3886 657 MobiDBLite consensus disorder prediction 164 220 - -
Lja1g3886 657 PANTHER CLATHRIN ASSEMBLY PROTEIN 5 633 IPR045192 GO:0048268|GO:0072583
Lja1g3886 657 CDD ANTH_N_AP180_plant 32 151 - -
Lja1g3886 657 MobiDBLite consensus disorder prediction 407 424 - -
Lja1g3886 657 PANTHER - 5 633 - -
Lja1g3886 657 SUPERFAMILY ENTH/VHS domain 30 151 IPR008942 -
Lja1g3886 657 MobiDBLite consensus disorder prediction 369 388 - -
Lja1g3886 657 SMART enth_2 30 160 IPR013809 -
Lja1g3886 657 SUPERFAMILY GAT-like domain 240 370 - -
Lja1g3886 657 Gene3D ANTH domain 234 383 IPR014712 GO:0005545|GO:0030136|GO:0030276|GO:0048268
Lja1g3886 657 Gene3D - 3 156 IPR008942 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3886 Lja-Chr1 49010335 49013324 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3886 - - gmx:100803282 1048.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3886 1 49010335 49013324 Lja1g3886 1 49010335 49013324 ECH