Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3875 ATGGATCTAGGAGGGAGTGAGAAGGAATCAGTGGTTACACAAGTGAGCATTGGAGGTTTTGATAGTGAAGTGAAAGCACATGATCTTGCTGAGTTTCTGGAAAATAGAATTGGACTTGTTTACAGATGCAGGCTGAAAACATCTTGGACACCGCCGGAGTCCTATCCGGAATTTAATGTCGCGGATACTGCATTGGTTAAGAGGACAGATGACTACAAGAAGGTGGAGCCTCATGCCTTTGTGCATTTTGCGTTGCCGGAATCTGCGACTGAGGCGCTTGATGCTTCGGGTAGTTGTGATCTAATGTGGGAGGGCAAACCGTTGAAGGTTATCAGCGGGCCTCAGAATCCGTACTTTTTGAACCAGAGGAGGAGAAAGGAGACCCCTTTTAAGCTGTCTGATGTGCTTGTTGAAATTGGGACTTTGGTTAGTCCGGAAGAGTTTGTTGTTGCTTGGAGAGGGCCTGAAAAAGGGGTGAACTTGCTTGTGGATCCTTTTGATAGGATGTGCAGGCTTCGTTTCAGTAGGGATACTGCATTCTCGATCAAACAAAATGAAAAAAAAGCAGTGATAAAGTGTGATTTTAAGGTGGAGTTCATGGTTAGAGACATATATGAGGTCAGGAGATATGATGATACATCGTATCGTGTTGTTTTATTGCATCTAGCTTCCTCGCCTTTGGTTTGGTATAGAACTGCTGATGATGACATTGAGGAATCGGTCTCATTTGATTTGCTGGATGATGATGATCCTTGGATTAGGACCACTGATTTTACTCCTAGTGGTGCCATTGGTCGATGCAATTTTTACAGAATCTCAATCCCACCTCGCCATGGTGCTAAATTGATGAAGGCCATGGCTTATCTGAACTTTCAAAGAGTGCAGGAGTTTCCACTTAAACGTCCACTTAGGATACAGGATGAACCTAATTTTGGGGTGCCCATGTCAGATGATTTCTTCTATATACATTGTCAGGAGGGGATTACTTTTGACATAATGTTCTTGGTTAATGCAGTCATACACAAAGGCATACTAAATCCTTACAGTTTATCAGATAGGTTTTTTGAAGTACTGAGAAATCAACCTCAGGAGGTCAATGTGGCTGCTTTGAAGCACTTATGTTCTTACAAGCGTCCAGTGTTTGATGCAGCTAAGAGGCTGAAGACAGTCCAAGAATGGCTGCTCAGAAATCCGAAGCTTTATCAGAGCTCCAAACAGGCAGATGATATTGTTGAGGTTAGAAGACTGGTTATTACTCCAACGAGAGCCTATTGTGTACCACCAGAACATGAATTGTCCAACAGGGTTCTTAGAAGATACAGAGAAGTTTCAAATCGTTTCTTGAGGGTCACCTTTATGGATGAAGGCATGCAGACAATTAATGTGAATGCTCTTAACTATTATGTTGCTCCCATAGTTAAGGAAATCACATCAAACTCCTTTCCTCAGAAGACAAGAATATATAAAAGGGTGAAGACTATCCTAGAAGAGGGATTTCACTTTTGTGACCGTAAATACGCATTTTTAGCCTTTTCATCCAATCAACTCAGAGATCGTTCTGCTTGGTTTTTTGCTGAAGACGACAAAATAAAATGTGACGGTATAAGAGATTGGATGGGTAGGTTCAGTAACAGGAATGTTGCAAAATGTGCTGCTAGGATGGGACAATGCTTCTCATCTACTTATGCAACAGTGGAAGTTCCTGCAACTGAAGTTAACTCCATGCTGCCTGATATTGAGAGGAATACATATGTTTTCTCTGATGGTATTGGTATTATCACTCCCGACCTTGCAGGTGAAGTTGCAGAAAAATTAAAACTGGACATTGCACCCTCTGCTTACCAGATTAGATATGCTGGTTTTAAAGGGGTAGTAGCCTCTTGGCCTGCTAAAGGGGATGGGATCAGACTTTCTTTGAGGACTAGCATGAACAAGTTTCAATCTAGTCATACTACTTTGGAGATTTGTGCTTGGACACGGTTTCAGCCTGGTTTTCTTAATAGGCAGATTATAACATTGCTTTCAGCACTGGAGGTATCTGATGAAGTATTCTGGAAAATGCAAGAGGTAATGATTTCAAAGCTGAATCAAATGCTTGTCAATGCAGATGTGGCATTTGATGTTCTTACTAAGTCTTGTGCTGAGCATGGAAATGCTGCAGCAATAATGTTAAGTTGTGGCTTCAGTCCCCAAACTGAACCTCATCTTAAAGGTATGTTAACTTCTATACGTGCTGCACAGCTTTGGGGCCTTAGAGAGAAGTCCAGGATTTTTGTTTCATCTGGGCGATGGTTGATGGGTGTCTTAGATGAGTTGGGTGTGCTTGAACAAGGGCAGTGCTTTGTTCAAGTGTCTACTCCTTCTCTGGAAAATTGTTTCTCTAAGCATGGCTCTAGGTTTTCAGAGACAAAGAGCCTGCAGGTAGTTAAAGGTTATGTTGTTATAGCCAAAAATCCATGTCTTCACCCTGGAGATGTAAGAATTTTGGAGGCCATTGATTCCCCTGATCTACATCATTTATATGATTGTCTTGTTTTCCCTCAAAAGGGTGACAGACCCCATACAAATGAAGCTTCTGGAAGTGACCTTGACGGGGATCTATATTTTGTCACATGGGATGATAATCTTATTCCACCTAGTAAGAGGAGCTGGATCCCTATGGAGTACGATGCTCAAGAAAGCAAACTTCAAACTCGGAAAGTCACTTCCCGGGACATCATAGATTTTTTTGTCAGAAACATGGTGAATGAGAATTTGGGTGCAATCTGCAATGCACATGTGGTACATGCTGATTCCAGTGATCATGGCGCCTTGGATGAGAAATGCATAATCTTGGCTGAAAAGGCAGCCGCTGCTGTTGATTTTCCAAAGACTGGGAAGCTTGTCATTATGCCTTCGGAGTTGAAACCAAAGCTCTACCCTGATTTCATGGGGAAAGATCAACACATGTCTTACAAGTCCAAGAAAATCCTGGGTAGACTTTACAGGAGGATTAAAGATGCTTATGACAAAGATATCGATGCACCTGAATTGAACTATGTGACAGGTGCTATACCTTATGATACAGAACTTGAGGTTCCTGGATCTGCTGATTTTATTGCTGATGCATGGAAACAAAAGTGCTCCTATGATGGCCAGTTGAGCGGGCTATTGGGTCAGTACAAGGTGAAAAGAGAAGAAGAAGTTGTCACCGGTCAGATTTGGTCCATGCCCAAATACAACAGCAGAAAACAAGGGGAGCTTAAGGAGAGGCTGAAGCACTCATATAGTGCCCTGAAAAAAGAATTTAGGCAAACTTTTGAGAAGTTGGATTCAGATTTTCGAGAATTAGGCGAGGAAGAAAAAAATTTGTTGTATGAGAAGAAAGCTTCAGCCTGGTATCAGGTGACATATCATCCTACATGGGTGAAAAAATCCCTTGAGCTGCAAGATAAATCCCCAGAGAACCTAGAGTCAAATAGTTTGGGGGAGACGGTGATGTTGAGTTTTCCTTGGATCGCAGTTGATTACCTAGCCCGCACAAAGATAAGGAATCGGGGATTTGGAAGATTTGATTCAACTAAGCCAGTTGGTTCTCTGGCAAAGTATCTATCAGAAAGGTTATAA 3606 0.4204 MDLGGSEKESVVTQVSIGGFDSEVKAHDLAEFLENRIGLVYRCRLKTSWTPPESYPEFNVADTALVKRTDDYKKVEPHAFVHFALPESATEALDASGSCDLMWEGKPLKVISGPQNPYFLNQRRRKETPFKLSDVLVEIGTLVSPEEFVVAWRGPEKGVNLLVDPFDRMCRLRFSRDTAFSIKQNEKKAVIKCDFKVEFMVRDIYEVRRYDDTSYRVVLLHLASSPLVWYRTADDDIEESVSFDLLDDDDPWIRTTDFTPSGAIGRCNFYRISIPPRHGAKLMKAMAYLNFQRVQEFPLKRPLRIQDEPNFGVPMSDDFFYIHCQEGITFDIMFLVNAVIHKGILNPYSLSDRFFEVLRNQPQEVNVAALKHLCSYKRPVFDAAKRLKTVQEWLLRNPKLYQSSKQADDIVEVRRLVITPTRAYCVPPEHELSNRVLRRYREVSNRFLRVTFMDEGMQTINVNALNYYVAPIVKEITSNSFPQKTRIYKRVKTILEEGFHFCDRKYAFLAFSSNQLRDRSAWFFAEDDKIKCDGIRDWMGRFSNRNVAKCAARMGQCFSSTYATVEVPATEVNSMLPDIERNTYVFSDGIGIITPDLAGEVAEKLKLDIAPSAYQIRYAGFKGVVASWPAKGDGIRLSLRTSMNKFQSSHTTLEICAWTRFQPGFLNRQIITLLSALEVSDEVFWKMQEVMISKLNQMLVNADVAFDVLTKSCAEHGNAAAIMLSCGFSPQTEPHLKGMLTSIRAAQLWGLREKSRIFVSSGRWLMGVLDELGVLEQGQCFVQVSTPSLENCFSKHGSRFSETKSLQVVKGYVVIAKNPCLHPGDVRILEAIDSPDLHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDDNLIPPSKRSWIPMEYDAQESKLQTRKVTSRDIIDFFVRNMVNENLGAICNAHVVHADSSDHGALDEKCIILAEKAAAAVDFPKTGKLVIMPSELKPKLYPDFMGKDQHMSYKSKKILGRLYRRIKDAYDKDIDAPELNYVTGAIPYDTELEVPGSADFIADAWKQKCSYDGQLSGLLGQYKVKREEEVVTGQIWSMPKYNSRKQGELKERLKHSYSALKKEFRQTFEKLDSDFRELGEEEKNLLYEKKASAWYQVTYHPTWVKKSLELQDKSPENLESNSLGETVMLSFPWIAVDYLARTKIRNRGFGRFDSTKPVGSLAKYLSERL* 1202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3875 1201 Pfam RNA dependent RNA polymerase 418 998 IPR007855 GO:0003968
Lja1g3875 1201 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 13 115 IPR000504 GO:0003723
Lja1g3875 1201 PANTHER RNA-DEPENDENT RNA POLYMERASE 7 1200 IPR007855 GO:0003968
Lja1g3875 1201 PANTHER RNA-DEPENDENT RNA POLYMERASE 6 7 1200 - -
Lja1g3875 1201 Gene3D - 6 128 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3875 Lja-Chr1 48878942 48883746 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3875 K11699 - gmx:100795178 2063.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3875 1 48878942 48883746 Lja1g3875 1 48878942 48883746 ECH