Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3869 ATGATAAGGCTCTTTACCTTTGCTATCATATTTAGCCTTTTGCTCAAACAAATGAGCCTGCAGGTTCATGGAGAAGTTGGCACTGCTGCAGCTTATGGACCCCCTTACATACCTACTGCTTGTGATGGAAATAGGAGAGAACAGTTTCCTCCAGGGAATATCTTTGCGGCTGTAAATGAAGGATTGTGGGATAACGGGGCAGCATGTGGAAGAAGATACAGAGTAAGGTGTGTGAGTGGACACAACAAGCCATGCAAAGGTGGTAGTGTTGATGTTAAAGTGGTTGATTCTTGTGCTGCAGGGTCGTCATGCTCAAACACCCTGCTCTTGTCAAATGATGCCTTTGCAGCCATCTCACGTTTCCCTAATGCAAAAATCAACATTGAATACACTCAGATATGA 402 0.4428 MIRLFTFAIIFSLLLKQMSLQVHGEVGTAAAYGPPYIPTACDGNRREQFPPGNIFAAVNEGLWDNGAACGRRYRVRCVSGHNKPCKGGSVDVKVVDSCAAGSSCSNTLLLSNDAFAAISRFPNAKINIEYTQI* 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3869 133 Gene3D - 25 133 IPR036908 -
Lja1g3869 133 PANTHER RLPA-LIKE PROTEIN, DOUBLE-PSI BETA-BARREL-RELATED 1 132 - -
Lja1g3869 133 SUPERFAMILY Barwin-like endoglucanases 23 133 IPR036908 -
Lja1g3869 133 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 27 133 IPR007112 -
Lja1g3869 133 SMART dpbb_1 56 130 IPR007112 -
Lja1g3869 133 Pfam Lytic transglycolase 56 130 IPR009009 -
Lja1g3869 133 PANTHER EG45-LIKE DOMAIN CONTAINING PROTEIN 1 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3869 Lja-Chr1 48777658 48778975 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3869 - - lja:Lj0g3v0337709.1 275.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3869 1 48777658 48778975 Lja1g3869 1 48777658 48778975 ECH