Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3867 ATGGAAGCAAACGCCGGAATGGTTGCTGGATCCCACAAGCGGAACGAGCTTGTTCGGATTCGTCACGATTCTTCTGACAGTGGGCCGAAACCGTTGAAGAATTTGAATGGACAAATCTGTCAAATATGTGGTGATAATGTTGGAATTTCCGCTACTGGTGATGTCTTTGTTGCTTGCAATGAGTGTGGATTCCCGGTTTGCCGTCCGTGTTATGAATACGAACGGAAGGATGGGAATCAGTCTTGTCCTCAGTGCAAGACGCGGTATAAGAGGCAAAGAGGGAGTGCACGAGTGGATGGAGATGAAGATGAAGATGATGTTGATGATCTAGAAAATGAGTTCAATTATGTTCAAGGGAATGCTAAAGCTAGCAGGCAGTGGGAAGAAGGTTCTGACCTTTCTTTATCTTCGAGACGTGATCCTCAGCAGCCGATTCCGCTTCTCACCAATGGCCAAACGGTGTCTGGCGAGATTCCATGTGCTACACCCGATACTCAATCTGTCCGAACTACTTCAGGTCCGTTAGGCCCAGGTGATAAAGCTCACTCACTTCACTATACGGATCCAAGGCAACCAGTTCCAGTACGAATTGTGGACCCATCAAAGGACTTAAATTCTTACGGTCTGGGAAATGTTGACTGGAAAGAAAGAGTTGAAGGTTGGAAGCTCAAGCAGGAGAAAAATATGGTACAAATGACTGGTAAATACCCTGAAGGGAAGGGAGGAGACATTGAAGGGACTGGTTCTAATGGAGAAGAACTTCAGATGGTTGATGATGCTCGACAACCTATGAGTCGTATAGTGCCTATTTCTTCAACTCAGATAACCCCTTATCGTGTTGTTATCATACTCCGGCTGATTATTCTTGGCTTTTTCTTACAATATCGTGTAACTCACCCGGTAAAAGATGCATATCCGCTGTGGATGACATCAGTTATCTGTGAGATTTGGTTTGCCTTCTCCTGGCTCTTGGATCAGTTTCCAAAATGGTCTCCCATTAATCGTGAAACATATCTTGAGAGGCTTGCTCTAAGATATGATCGTGAAGGAGAGCCATCGCAGCTGGATCCTGTTGACGTTTTTGTTAGTACAGTGGATCCTCTCAAAGAGCCGCCTCTTATTACTGCAAACACTGTTTTGTCTATACTTGCTGTTGATTACCCTGTGGACAAGGTTTCCTGCTATGTATCAGATGATGGTTCTGCTATGTTGACCTTTGAAGCCCTATCAGAAACAGCTGAGTTTGCGAAGAAGTGGGTGCCTTTTTGCAAAAAGCACAATATTGAGCCAAGAGCCCCCGAGTTTTATTTTTCCCAGAAGATTGATTACTTAAAAGACAAGATTCAACCCTCTTTTGTAAAAGAGCGACGGGCAATGAAGAGAGAATATGAAGAGTTCAAAATACGAATCAATGCCCTTGTAGCAAAAGCTCAGAAGGTGCCAGAGGAAGGCTGGACAATGCAGGATGGAACTCCTTGGCCTGGAAATAATCCTAGGGATCATCCTGGAATGATTCAGGTGTTTTTAGGTCATAGCGGTGGGCTTGATACAGATGGAAATGAGCTTCCTAGGCTTGTTTATGTTTCTCGTGAAAAGAGACCAGGCTTCCAACATCACAAGAAGGCTGGAGCTATGAATGCTTTGATCCGAGTTTCAGCTGTCTTGACCAATGGTGCATATCTTTTGAATGTTGATTGTGATCACTATTTCAATAACAGCAAAGCTCTTAAAGAAGCGATGTGTTTCATGATGGACCCTGCTTATGGAAAGAAGACATGCTATGTGCAATTCCCTCAGAGGTTCGATGGCATTGACTTGCACGATCGATATGCCAATCGTAACATTGTGTTCTTCGATATCAACATGAAAGGTCAGGATGGTATTCAAGGCCCAGTCTATGTGGGAACTGGTTGCTGTTTCAATAGGCAGGCTTTGTATGGTTATGATCCTGTTTTGACTGAGGAAGATTTGGAACCTAATATTATTGTCAAGAGTTGCTGGGGTTCTAGAAAGAAGGGCAGGGGTGGTAATAAGAAGTACATTGACAAGAAGAGAGCAGTTAAAAGAACCGAATCCACCATTCCCATATTTAATATGGAAGATATAGAGGAGGGTGTTGAAGGTTATGATGATGAAAGGTCACTTCTCATGTCTCAGAAAAGCTTGGAGAAGCGTTTTGGGCAATCTCCAGTTTTTATTGCTGCCACCTTCATGGAACAGGGTGGCATTCCACCTTCAACCAACCCTGCAACTCTTCTTAAGGAAGCAATTCATGTCATCAGTTGTGGTTATGAAGACAAGACAGAATGGGGCAAAGAGATCGGATGGATCTATGGTTCTGTGACGGAAGATATCTTGACTGGGTTTAAGATGCATGCTCGTGGTTGGATTTCCATTTATTGCATGCCACCCCGCCCAGCATTCAAGGGTTCTGCTCCCATCAATCTTTCTGACCGTCTCAATCAGGTGCTTCGTTGGGCCTTGGGTTCTATTGAAATCTTTATGAGCAGGCATTGTCCCTTGTGGTATGGCTACAACGGGAAGTTGAAGGGCCTCCAGAGGCTTGCTTATATTAACACTGTTGTCTACCCCTTCACCTCAATCCCATTGCTTGCTTACTGTACACTCCCTGCTTTTTGTCTCATCACAAATAAATTTATTATTCCAGAGATAAGTAACTTTGCCAGCATGTGGTTCATTCTCCTTTTCGTCTCCATTTTCACTACTGCAATTCTTGAGCTCAGGTGGAGTGGGGTCGGTATAGAAGATTGGTGGAGAAATGAACAGTTCTGGGTTATTGGAGGAACATCAGCACATCTCTTTGCAGTGTTCCAAGGGCTTCTTAAAGTGCTTGCTGGGATTGATACAAATTTCACTGTTACATCTAAGGCAAATGATGAAGATGGCGACTTTCAAGAGCTATATATATTCAAATGGACATCACTTCTCATCCCTCCTACAACAGTGCTTATTGTGAATTTGGTAGGGATAGTGGCTGGTGTGTCCTTTGCCATAAACAGTGGTTACCAATCTTGGGGTCCACTATTTGGTAAGCTATTCTTTGCTATCTGGGTCATTGCACATTTATACCCATTCTTGAAGGGTCTCTTGGGTAGGCAAAATCGTACCCCCACCATTGTTATTGTTTGGTCCATTCTTCTTGCTTCAATATTCTCCTTGCTGTGGGTGAGGATTGACCCCTTCACCACAGATTCCAGCAAAAGCAATGGTCAATGTGGCATCAACTGTTAG 3252 0.4382 MEANAGMVAGSHKRNELVRIRHDSSDSGPKPLKNLNGQICQICGDNVGISATGDVFVACNECGFPVCRPCYEYERKDGNQSCPQCKTRYKRQRGSARVDGDEDEDDVDDLENEFNYVQGNAKASRQWEEGSDLSLSSRRDPQQPIPLLTNGQTVSGEIPCATPDTQSVRTTSGPLGPGDKAHSLHYTDPRQPVPVRIVDPSKDLNSYGLGNVDWKERVEGWKLKQEKNMVQMTGKYPEGKGGDIEGTGSNGEELQMVDDARQPMSRIVPISSTQITPYRVVIILRLIILGFFLQYRVTHPVKDAYPLWMTSVICEIWFAFSWLLDQFPKWSPINRETYLERLALRYDREGEPSQLDPVDVFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETAEFAKKWVPFCKKHNIEPRAPEFYFSQKIDYLKDKIQPSFVKERRAMKREYEEFKIRINALVAKAQKVPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGHSGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAYGKKTCYVQFPQRFDGIDLHDRYANRNIVFFDINMKGQDGIQGPVYVGTGCCFNRQALYGYDPVLTEEDLEPNIIVKSCWGSRKKGRGGNKKYIDKKRAVKRTESTIPIFNMEDIEEGVEGYDDERSLLMSQKSLEKRFGQSPVFIAATFMEQGGIPPSTNPATLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEIFMSRHCPLWYGYNGKLKGLQRLAYINTVVYPFTSIPLLAYCTLPAFCLITNKFIIPEISNFASMWFILLFVSIFTTAILELRWSGVGIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKANDEDGDFQELYIFKWTSLLIPPTTVLIVNLVGIVAGVSFAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRIDPFTTDSSKSNGQCGINC* 1084
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3867 1083 MobiDBLite consensus disorder prediction 1 30 - -
Lja1g3867 1083 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 21 1083 - -
Lja1g3867 1083 ProSiteProfiles Zinc finger RING-type profile. 40 86 IPR001841 -
Lja1g3867 1083 SUPERFAMILY RING/U-box 25 112 - -
Lja1g3867 1083 MobiDBLite consensus disorder prediction 118 158 - -
Lja1g3867 1083 CDD mRING-HC-C4C4_CesA_plant 38 88 - -
Lja1g3867 1083 Pfam Cellulose synthase 358 1074 IPR005150 GO:0016020|GO:0016760|GO:0030244
Lja1g3867 1083 SUPERFAMILY Nucleotide-diphospho-sugar transferases 376 658 IPR029044 -
Lja1g3867 1083 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 113 IPR013083 -
Lja1g3867 1083 Pfam Zinc-binding RING-finger 30 107 IPR027934 -
Lja1g3867 1083 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 516 658 IPR029044 -
Lja1g3867 1083 Coils Coil 456 476 - -
Lja1g3867 1083 PANTHER CELLULOSE SYNTHASE 21 1083 - -
Lja1g3867 1083 MobiDBLite consensus disorder prediction 14 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3867 Lja-Chr1 48762065 48768351 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3867 1 1081 Glycosyltransferase AT4G32410 85.806 0.0 1900
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3867 K10999 - gmx:100810567 2103.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3867 1 48762065 48768351 Lja1g3867 1 48762065 48768351 ECH