Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3848 ATGATGGGTGCTGTTCCTGCTAGATACCCTTTGGGAATCCCTTTGCACTCTCACGGTGGTGCTCTTTCTCGCAGAGTCGACTTCACCACCTCACACTTCCCTGTTCATCTTGACCTTTCAAGAATTGCCTTGTGCCCCCGTTCTGCTTCTGAGGAATTCATTGATAGAGTATGTGCACGGTCTGATATTGATGATTTTGACTGGGAATGGGACGAAGTTCCGACACCTATTCTTGACACGGTTGAAAATCCTCTTTGCTTGAAGAACCTTTCTCTTAAGGAACTGAAACAACTAGCTGCTGAAATCCGTATGGACCTATCTTCTCTTATGTCAGATACACAAATATCACCGAAAGCAAGTATGGCAGTAGCGGAGCTGACGGTTGCAATGCATCATGTTTTTCATGCTCCAGTAGACAAGATATTGTGGGATGTTGGGGATCAAACATATGCACATAAGATTCTTACAGGAAGGCGATCACTTATGAAGACAATGAGACAAAAGAATGGTCTTTCTGGTTTTACATCCCGATCTGAGAGTGAATATGATGCATTTGGTTCAGGTCATGGGTGCAACAGTATTTCTGCTGGACTTGGCATGGCAGTGGCACGGGATATTAAAGGGAGGCGAGAGCGAATAGTTGCAGTTATCAGCAATTGGACTACGATGGCTGGTCAGGTGTATGAGGCAATGAGCAATGCAGGATGTTTGGACTCAAATCTGGTGGTGATTTTGAATGACAGCCGTCACTCTTTACTCCCCAAAATCGATGAGGGCCCAACAACTTCTGTCAGTGCCCTGTCTAGTACCCTAAGCAGGCTCCAGTCCAGTAAATCTTTCCGAAGATTTAGAGAAGCTGCTAAGGGTGTTACTAAACGAATTGGTAGGGGTATGCATGAATGGGCAGCTAAAGTTGATGAATATGCCCGTGGTATGATGGGTCCACTAGGTGCTACTCTTTTTGAAGAGCTTGGATTGTACTACATTGGACCAGTGGATGGACACAATATGGAAGATCTAGTATGTGTGTTGCAAGAAGTAGCATCCCTGGATTCAATGGGTCCTGTGTTAGTTCATGTGATAACCGATAAAAATCAGGGAGTAGAAAACAATCAGAAAAGTGATATAACGGACAGGCATCAGAATGATTCTGTTGAAACTGATTTTTTAAACCATGATGTTCGCCCTCAAACGTATGGTGATTGCTTTGTGGAGACTTTGGTTGCAGAAGCAGAGAAAGACAAAGATATTGTGGTTGTTCATGCAGGAATGTTGATGGAGCCATCACTTGAACTGTTTCGAGAAAAATTTCCAGATAGATTTTTTGATGTGGGAATGGCTGAGCAACATGCTGTGACATTTGCTTCTGGTTTGTCATGTGGTGGATTGAAGCCATTTTGCATTATACCTTCTTCCTTCCTACAAAGAGCCTATGACCAGGTGGTTCATGATGTTGATCAACAGAAAATTCCAGTGCGTTTTGTCATTACAAGTGCGGGAGTGGTTGGTTCTGATGGTCCCCTCCATTGTGGGGCATTTGACATAACCTTCATGTCATGCTTGCCAAACATGATAGTCATGGCGCCATCTGATGAGGTTGAACTCATGCACATGGTGGCTACTGCTGCTCAAATCAATGATCGGCCCGTATGCTTTCGGTATCCTAGGGGTGTCTTGGTTGGGGAAGACTACACTATACCCAATGGAATCCCCATTAAGATTGGAAAAGGAAGAATTCTTGCTGAAGGTAAAGATGTTGCTTTACTGGGATATGGATCAATGGTTCAGAACTGTCTGAAGGCTCACTCACTTCTTGCAAAGCTTGGTGTTGAGGTGACTGTTGCTGACGCAAGGTTCTGCAAGCCCCTTGACATCAAGCTTCTGAGGCATCTTTGTAAACACCATTCTTTTCTAATTACTGTTGAGGAAGGTTCCGTAGGGGGATTTGGTTCCCATGTTGCTCAGTTTATTGCACTGGATGGACTGCTTGATAGAGGAATCAAGTGGCGACCAATTGTCTTACCAGACAGATACATTGAGCATGCATCTCCAAATGAGCAGCTTGACCAAGCAGGGTTGACTGGACATCACATTGCTGCAACCGCGTTGAGTTTGCTCGGCCGTACCCGTGAAGCTCTCCAGTTTATGTGCTTCTGA 2157 0.4465 MMGAVPARYPLGIPLHSHGGALSRRVDFTTSHFPVHLDLSRIALCPRSASEEFIDRVCARSDIDDFDWEWDEVPTPILDTVENPLCLKNLSLKELKQLAAEIRMDLSSLMSDTQISPKASMAVAELTVAMHHVFHAPVDKILWDVGDQTYAHKILTGRRSLMKTMRQKNGLSGFTSRSESEYDAFGSGHGCNSISAGLGMAVARDIKGRRERIVAVISNWTTMAGQVYEAMSNAGCLDSNLVVILNDSRHSLLPKIDEGPTTSVSALSSTLSRLQSSKSFRRFREAAKGVTKRIGRGMHEWAAKVDEYARGMMGPLGATLFEELGLYYIGPVDGHNMEDLVCVLQEVASLDSMGPVLVHVITDKNQGVENNQKSDITDRHQNDSVETDFLNHDVRPQTYGDCFVETLVAEAEKDKDIVVVHAGMLMEPSLELFREKFPDRFFDVGMAEQHAVTFASGLSCGGLKPFCIIPSSFLQRAYDQVVHDVDQQKIPVRFVITSAGVVGSDGPLHCGAFDITFMSCLPNMIVMAPSDEVELMHMVATAAQINDRPVCFRYPRGVLVGEDYTIPNGIPIKIGKGRILAEGKDVALLGYGSMVQNCLKAHSLLAKLGVEVTVADARFCKPLDIKLLRHLCKHHSFLITVEEGSVGGFGSHVAQFIALDGLLDRGIKWRPIVLPDRYIEHASPNEQLDQAGLTGHHIAATALSLLGRTREALQFMCF* 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3848 718 Hamap 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 77 707 IPR005477 GO:0008661|GO:0016114
Lja1g3848 718 Pfam Transketolase, pyrimidine binding domain 398 558 IPR005475 -
Lja1g3848 718 Pfam 1-deoxy-D-xylulose-5-phosphate synthase 78 362 IPR005477 GO:0008661|GO:0016114
Lja1g3848 718 SUPERFAMILY TK C-terminal domain-like 570 706 IPR009014 GO:0003824
Lja1g3848 718 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 75 458 IPR029061 -
Lja1g3848 718 Coils Coil 92 112 - -
Lja1g3848 718 Gene3D - 575 706 IPR009014 GO:0003824
Lja1g3848 718 SMART Transket_pyr_3 397 562 IPR005475 -
Lja1g3848 718 TIGRFAM dxs: 1-deoxy-D-xylulose-5-phosphate synthase 80 704 IPR005477 GO:0008661|GO:0016114
Lja1g3848 718 Gene3D - 70 371 - -
Lja1g3848 718 Gene3D - 397 565 - -
Lja1g3848 718 CDD TPP_PYR_DXS_TK_like 403 556 - -
Lja1g3848 718 Pfam Transketolase, C-terminal domain 575 698 IPR033248 -
Lja1g3848 718 PANTHER 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-LIKE PROTEIN 2 717 - -
Lja1g3848 718 CDD TPP_DXS 119 367 IPR005477 GO:0008661|GO:0016114
Lja1g3848 718 PANTHER 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-RELATED 2 717 IPR005477 GO:0008661|GO:0016114
Lja1g3848 718 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 396 585 IPR029061 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3848 Lja-Chr1 48616577 48623244 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3848 435 657 Acyl Lipid Metabolism Gene Families AT1G55510 24.490 4.43e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3848 K01662 - gmx:100793268 1182.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3848 1 48616577 48623244 Lja1g3848 1 48616577 48623244 ECH