Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3847 ATGCTGAACAACAAAGTTTGCTTTTTAGGCTCTGAGTTACTCCTCTTCCCCTATTATTTAAACCCCTCATTGTCTCTCAAGTTTCACTCCCTACAATTTCATAGAGCTAGCTGCAATCTGAATCCATCAGCAATGTCCAAGCTTCATCTTTCTTCATTCCTCTCATGTCTCATCCTCCTTCCAACACTGTTCTTCCCTTACTCTCTTTGTGATGTTGGTACTGCAGCCCGATACAAAGCTCCTTATTTACCGACGGCGTGTTTCGGTAAAGATGCATCGGAGTTCCCGTCCAACAACATGTTTGGTTCGGCAGGGGAAGGTATATGGGACAATGGCGCGGCCTGCGGGAGGCAGTATCAGGTGAGGTGCATCAGTGCTGCTGCTCCGAGGACGTGCGTTCCTGGGCAGAGCATTCAGATTAAGATTGTTGATCGGGCACAATCCTCTGTTTCTAGGCCTTCTGCCAAGGACACTTCCATGGTACTCTCCACCACCGCGTTCCAGGCCATCGCGAATGCTTCAGCATCGTTGATTAACATTGAATTCCAGCAGGTTTGA 558 0.4839 MLNNKVCFLGSELLLFPYYLNPSLSLKFHSLQFHRASCNLNPSAMSKLHLSSFLSCLILLPTLFFPYSLCDVGTAARYKAPYLPTACFGKDASEFPSNNMFGSAGEGIWDNGAACGRQYQVRCISAAAPRTCVPGQSIQIKIVDRAQSSVSRPSAKDTSMVLSTTAFQAIANASASLINIEFQQV* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3847 185 Pfam Lytic transglycolase 108 181 IPR009009 -
Lja1g3847 185 PANTHER EG45-LIKE DOMAIN CONTAINING PROTEIN 45 185 - -
Lja1g3847 185 PANTHER EG45-LIKE DOMAIN CONTAINING PROTEIN 45 185 - -
Lja1g3847 185 SUPERFAMILY Barwin-like endoglucanases 59 185 IPR036908 -
Lja1g3847 185 Gene3D - 71 185 IPR036908 -
Lja1g3847 185 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 84 185 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3847 Lja-Chr1 48610119 48612459 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3847 - - lja:Lj1g3v1914930.1 368.622