Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3831 ATGTCCAACAATCTTGTTTCGCAGCCCATGCCTAGCATGCCCATGGCTCAGTTGGAGCCAATTTTGAACAAGGTTGATTCGTCGGGGAGGCAGATGGAATTGGGGATTTTGGGTGGTCCTGTATCGACTGATCCTATGTCGCGGCCTCCGGGTGCCTCGAATGATCATGCTGGGTTATCGAGTGGGCGGGTAGAAGCCCAAGCACAAGCACAAGCACAAGCACAAGCACAAGCACAAGCTAGTCATAGGGGATTGCATCAGCTTCATTTACCTAGCAGGCAATCCGTGCAAGTGGGGGCACAGCAACTGTCAGCAACGACTCCCAAGCGGAAGGCGCCGATGGAATTGTCACCGAGTGGCTCTGTGGTGTCTAACAAGCGGGTTGCGCAAATGGGGCCTAGACCTTGGTTGCAGCAAGGTTCTAATGCATCGAATAGAGGTTCTTCGCAGATGCAATCGCCGTCGAATGGTTCTAGGCCACAGCAGCATTCTGGGGCGTCTAGTAAGAGAAAAACACAGATGATGGATTCTACTTCCGGTAAAGCTGGGACACCTCGGTCCTCGAATTCGAAAAATCAGAATACACAACTGAAACAATCCCCCAGGGCTCAAAGTGAATCCTCGGAAAGCGTTAGGTCCAAGATGAGAGAATCACTAGCTGCTGCTCTGGCCTTGGTTTCCCAACAAGAAAAACCTCTGGCCTCAAGCGAGAATACACCGAACAGTGATGGCAATGCTCAGGGTAAATTAGAGGACAGCTCTGATTGTGCAGGGTCAGCATCTGCACCCGTTGTTACTGCTTCAGAGCAAAGGCAGGAAATTTCTCAGTCTGCTAATTCCTCCTTTTCTGCAACTGTTTCAGTTGACCATGAGATGGGAGAGCAAGGAAAGAACACAGCGTCTCATGAAGATTTATCTGAAAAATGCAAGGACTATGAAGTGGGGTCCACAAGTGTGTCAAACAATGAAAATATACTGAGTTCTATGGAAGTCCTTAACTGTGATAAGCCAGACTTTCAGTCTAGTTACACTTTGACTACTGATGATGTTCCTTTCAGTGACAGTTTTTTTATGAAAGATGATCTTTTGCAGGGAAATGGTCTTTCCTGGGTATTATCTGATATGGTAGAGGTGGACTTGGGAAATCAGAGGGAAGGTCAAACTAATATAGAGCTAAGATCTGAACCTGATGAAACAGGTGGAGCTTCTAAGGAGGCAACCCCATTACCTGAACTTTTAGCATCACAGATAGAAGCAGAGCTCTTCAAACTGTTTGGAGGTGTGAATAAGAAGTACAAAGAGAAAGGGAGGTCTCTTTTATTCAATTTGAAAGATCGGAATAATCCTGAACTTAGAGAGAGGGTTATGTTCGGTCAAATTCCCCCAGAACAATTATGTTCCATGACTGCTGAGGAACTTGCTTCAAAGGAGCTTTCTCAGTGGCGGATAGCCAAGGCTGAGGAGTTTGATAAAATGGTGGTTTTACCTGATTCAGATGTTGATTTTAGACGTTTGGTCAAGAAAACCCATAAAGGTGAATTTCAAGTGGAAGTTGATCACGAAGACAATGTTCCAGTGGAAGAGGTTTCAGGTGGCACTGCCTCGGCTGTTCGAAGCCAAACAACTAAAAAGGTTGTTGAAGCCACTTCTCCTTCCAGAGCTGACATCATCAAAAGAGATGTGAACACTGGTGGTGAGAAGAACAATTTACAGAAGGATAATTCATTTTCCATTACGCTTTCTTCCAATGATGGGACTGATCCAATGCAAGGGCTTATGACCGATGATGCACTAAAGGACCCTGACTTCCTTCCACCAATTGTCTCTCTTGATGAATTCATGGAATCCCTTGATACAGAGCCACCATTTGAAAATTTACCTGTAGAATCTGGAAAAGTGACCCCTATCTCAGTCAAGGATGGTTCTGGGGTTGGTTCTAAGTCAAAATCTTCAGATTTAACTCCAAGTGAGAAAGCTGATGTCACCACTGATAAGTCTGAGAAGTTTCAAAGCACACGTGTAAATTCGGATGTTGAAGAGGAAAAAAAGGTAAATGCGGAATCTGGGGACAGTTTGTCTAATGGTAAGAATCAAGCTGACATGAAACCAACTGATGATCATGCCAAGGAGAGGTCAACTGATGACATGAAGTCTGCATCGAACGATGCTGTGGTGAGACCCAGTCAGTTGCATGCTGAACAGAAATTTGGTAATGATAATGTATATTCAAAAACTGCAGTCCTCATTAAGGGTGAATGCCTCTGGGAGGGAATGCTTCAACTGAATATCTCTACCACTCATTCAGTCATAAGCATCTTCAAAAGTGGTGAGAAAACCTCTACAAAAGACTGGCCTGGGTTTCTTGACATCAAGGGAAGGGTTCGACTCGAGCCATTTGAGAAGTTTCTGCAAGAGCTTCCACAGTCAAGAACTCGTGCTATCATGGTTTTACATTTTGTTTCCAAAGGGTCGTCCCCTGAGGAGCAATCAACCATCAAAGAGGTAGCTGAGTCGTACATTACAGATGAGAGAGTGGGATTTGCTGAGCCTGTGAATGGAGTTGAACTTTACTTTTGCCCACCTCATAAGAAAACAGTTGAAATGCTGGGCAAGATTCTTCCAAAGGAACAAATTGAGGCAGTTAATTCTATTGATAATGGTCTAATTGGTGTTGTTGTATGGAGAAAAACTAATTTAACATCGACTATATCACCCACCCACAAACATAGCTCTAAAAGACAATCATCCTTTAATAGGAGGCAGCAAGATACAAATGTGAATGCTAATAACACTCACAAAGCAGTGCCCTCGAAGGGCATTAAGGCAGCCGAGAATGGACCTTCAGGTGGTGGTGGTGTTGACGATGATGATGATGTTCCTCCTGGATTCGGGCCAGGAACGACCAGAGTCGAGGATGACCTCCCAGAGTTTAATTTCTCCAGGAGCTCAAACCCACCACCCCACCTGGTCCAGAAACCTCTAGGACCTGGTATGGTCCCGTTTCACTCGGTTAGCAAAACCCCTTCGCGTCCCGCGGAACAAATGAGGGAACTTGTGCTCAAATATGGGCAAAACCAAGCAAATGTATCTTCAGTAAACTGGCAGGATAAATTTGGAGGTACAATTCAACCCTGGAATGATGATGATGATGACATACCTGAATGGCAGCCTCAATCCTCGTTGAATCAGTTTCCTCCACAACAGACAATGCGTAATTCTCATCTTAGACCACACACCCAGAATCAACCATTTGTTGGTTCACCTATGGCAGCACAGTATCTGCAACAAGCACCTATGAATGTAAACCACGTTCAGAGTAATCTTAACCCTCAATGGGTTCCACGTAGCCAGGGTGATAACACTCAACCAAGTGGTGGATATGGAGCACCTGCACAAGGAACTGGCTGGTCTCAACATGTTTCTAGAAGTAGGAGATTTTAG 3441 0.4496 MSNNLVSQPMPSMPMAQLEPILNKVDSSGRQMELGILGGPVSTDPMSRPPGASNDHAGLSSGRVEAQAQAQAQAQAQAQASHRGLHQLHLPSRQSVQVGAQQLSATTPKRKAPMELSPSGSVVSNKRVAQMGPRPWLQQGSNASNRGSSQMQSPSNGSRPQQHSGASSKRKTQMMDSTSGKAGTPRSSNSKNQNTQLKQSPRAQSESSESVRSKMRESLAAALALVSQQEKPLASSENTPNSDGNAQGKLEDSSDCAGSASAPVVTASEQRQEISQSANSSFSATVSVDHEMGEQGKNTASHEDLSEKCKDYEVGSTSVSNNENILSSMEVLNCDKPDFQSSYTLTTDDVPFSDSFFMKDDLLQGNGLSWVLSDMVEVDLGNQREGQTNIELRSEPDETGGASKEATPLPELLASQIEAELFKLFGGVNKKYKEKGRSLLFNLKDRNNPELRERVMFGQIPPEQLCSMTAEELASKELSQWRIAKAEEFDKMVVLPDSDVDFRRLVKKTHKGEFQVEVDHEDNVPVEEVSGGTASAVRSQTTKKVVEATSPSRADIIKRDVNTGGEKNNLQKDNSFSITLSSNDGTDPMQGLMTDDALKDPDFLPPIVSLDEFMESLDTEPPFENLPVESGKVTPISVKDGSGVGSKSKSSDLTPSEKADVTTDKSEKFQSTRVNSDVEEEKKVNAESGDSLSNGKNQADMKPTDDHAKERSTDDMKSASNDAVVRPSQLHAEQKFGNDNVYSKTAVLIKGECLWEGMLQLNISTTHSVISIFKSGEKTSTKDWPGFLDIKGRVRLEPFEKFLQELPQSRTRAIMVLHFVSKGSSPEEQSTIKEVAESYITDERVGFAEPVNGVELYFCPPHKKTVEMLGKILPKEQIEAVNSIDNGLIGVVVWRKTNLTSTISPTHKHSSKRQSSFNRRQQDTNVNANNTHKAVPSKGIKAAENGPSGGGGVDDDDDVPPGFGPGTTRVEDDLPEFNFSRSSNPPPHLVQKPLGPGMVPFHSVSKTPSRPAEQMRELVLKYGQNQANVSSVNWQDKFGGTIQPWNDDDDDIPEWQPQSSLNQFPPQQTMRNSHLRPHTQNQPFVGSPMAAQYLQQAPMNVNHVQSNLNPQWVPRSQGDNTQPSGGYGAPAQGTGWSQHVSRSRRF* 1147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3831 1146 PANTHER SPOC DOMAIN / TRANSCRIPTION ELONGATION FACTOR S-II PROTEIN 64 1116 - -
Lja1g3831 1146 MobiDBLite consensus disorder prediction 561 598 - -
Lja1g3831 1146 Gene3D - 390 476 IPR036575 GO:0006351
Lja1g3831 1146 MobiDBLite consensus disorder prediction 902 934 - -
Lja1g3831 1146 MobiDBLite consensus disorder prediction 229 294 - -
Lja1g3831 1146 MobiDBLite consensus disorder prediction 386 405 - -
Lja1g3831 1146 MobiDBLite consensus disorder prediction 1108 1128 - -
Lja1g3831 1146 MobiDBLite consensus disorder prediction 902 994 - -
Lja1g3831 1146 MobiDBLite consensus disorder prediction 135 208 - -
Lja1g3831 1146 Pfam SPOC domain 752 894 IPR012921 -
Lja1g3831 1146 SUPERFAMILY Elongation factor TFIIS domain 2 409 477 IPR036575 GO:0006351
Lja1g3831 1146 ProSiteProfiles TFIIS central domain profile. 378 501 IPR003618 GO:0006351
Lja1g3831 1146 MobiDBLite consensus disorder prediction 1108 1146 - -
Lja1g3831 1146 MobiDBLite consensus disorder prediction 567 589 - -
Lja1g3831 1146 MobiDBLite consensus disorder prediction 64 108 - -
Lja1g3831 1146 MobiDBLite consensus disorder prediction 658 687 - -
Lja1g3831 1146 SMART mid_6 390 484 IPR003618 GO:0006351
Lja1g3831 1146 MobiDBLite consensus disorder prediction 295 311 - -
Lja1g3831 1146 MobiDBLite consensus disorder prediction 641 657 - -
Lja1g3831 1146 MobiDBLite consensus disorder prediction 700 717 - -
Lja1g3831 1146 MobiDBLite consensus disorder prediction 619 724 - -
Lja1g3831 1146 Pfam Transcription factor S-II (TFIIS), central domain 404 488 IPR003618 GO:0006351
Lja1g3831 1146 MobiDBLite consensus disorder prediction 1 317 - -
Lja1g3831 1146 PANTHER TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN 64 1116 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3831 - - gmx:100808809 1503.8