Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3813 ATGGACGGTCAGAGCCAAGTGCAACCGCAGCCGCCACCGCCACATGGCGAAGACGACGATGATTCGAAGAAGGAAGAAGAGGAGTTATTGATCGACAAGGTTAACAAGCTCATGGCGAAGATCACCTCTAACCCTGACAACCCTAAACCCTCCGTTCTCCACGCCCTTGCTTCCATTCTCGAAACGCATGAGTCCCGGTACATGGAAGAGAGTGGTCATTCTTCCTCCAGTAATGCCCGCGCCGCGCATCTCATTGGCCGCCTTGGGAGTGTAATCAGAGAAAATGATGATTTCTTTGAGTTGATATCTGCAAAGTTTCTGTTAGAGACTAGATACTCCACTGCGGTACAAGCAGCTGCTGCCAGGCTTATCCTCTGCTGTTCCCTGACTTGGATTTACCCTCATGTTTTCGAAGAATCCGCTGTGGAGAACATAACAAATTGGGTGAAGGATGACAATCTTATATTTTCTGGCGAAGAGCAAAATCAAAGAGAGGCCTCAGTTTCTGAAATGTTGAAAACCTATTCCACCGGGCTCCTTGCTGTGTGTTTGGTCGGAGATGTTAAGGTAGTGGAAGATGTATTGACATGTGGCTTGTCGGCTAAGCTTATGCGTTATCTTCGCTTACGTGTGCTGGGGGAGACAAGTGGCAGCCAGAGAGATACTAGTCCTTTAACAGAAAGTAGGCATTCATCTGGGAATACTTTAGTCAGAGGTAACGATGATGGCCACAGTAGGTTTCGCCAGCTCCAAGAATTGAGTCACTTGGATGATGCAAGGGTGTTTGACGAAAGGTCTTTAGATGACCTAACCCTTGAAAGGGAAAGGGGTCAAGATAGAAACACAAGTGGACAAACTTGTCAAGAAATTTCTTGGATAGATGGTGAACCACCTGATGTGCTCAATGAAGGTGCTGATATCTGCGAGGTAGATTCTGATGGGGAAGATAGATGGCACTGTAGAGATATACGTGATGGAAGGATAAAATATGATGAACAGGAAGACAATGCTAGAGATGACTCTTCAAGGCAGCGTGCAAACCGTGGAGGGGGAAGATCCCGAGGGAAAGGAAAGGTCAATGAAGGGACGGTAGAAAGTGAACCAGTTTTGTCACCTCCTGGTCCTGGTAGTCGATTAGGGCAGGGGTGCAGTGTTAGAGATAGGAGCATAGTAAGGAATGCTGATGTTCGGAGGGTTCCTGATTCTAAGAAGACTCTTGGCAGGATCACTTCTGAGGCGTCCATTTTTGAAAGAACGGATAATGATGACTGTTTCCAAGGGTGCCATATTGGAAGCAAAGATATTTCTGATCTTGTGCGAAAAGCTGTGCAAGCTGCTGATGCTGAAGCCAGATCAGCCAATGCACCTGAAGAAGCTGTCAGAGCAGCTGGTGATGCTGCTGCTGACTTTGTTAAAACTGCAGCTTTAGAGGAATATGAATCCACTAATGATGAAGAAGCAGCTGTTTTGGCTGCTTCGAGAGCTGCATCAACTGTTATTGATGCTGCATCTGCACCTGAAGTTTCTAGGAACTCTGTCTGCCTCAATAATGAGGCCGAAAATGCGAGTGAATCTTGTGAGGATGTTGAAGATTACTTCATCCCATACGTTCAATCACTTGCAAAATTGAGGGAAAAATATTGCATACAGTGTCTTGAGTTACTTGGGCAATATGTAGAAGCTCTTGGCCCTGTGTTGCATGAGAATGGTGTTGACGTGTGTCTTGCACTGCTGCAGCAGAATTCTAAGCATCAGGAGGCCTCCAAGGTTGCGTTACTGTTGCCTGATGTCATGAAGCTAATCTGTGTTTTGGCAGCACACAAGAAATTTGCTGCAGATTTTGTGGACCGTGGGGGAATGCAAAAGCTGCTAGCTGTCCCTAGATTGTCTCAAACTTTCTATGGCCTTTCTTCTTGTCTAGTTACAATTGGTTCTGTTCAGGGGTTAATGGAACAGGTTTGTGCGCTTCCATCGAATCTTGTTTATCATGTGGTTGAGTTGGCTCTCCAACTCCTCGAGTGCAATCTTGATCAAGCTCGACAGAAAGCCGCACAATTCTTTGCTGCTGCATTTGTTTTCAGGGCAGTTATCGATGTTTTTGATTCTCAGGATGGCTTACAGAAATTGCTGGGCCTTTTAAATGATGTTGCTTCAGTAAGATCAGGAGTAACTTCTGGAGCCTTGGGTTTATCTAACTTAGGATCACTTCGAAATGATCGATCATCTGCAGAAGCGCTGACATCATCTGAGAAGCTTGTAGCCTATGAAACTTGTGTTGCTTTGCAGAAATATTTTAGAGCCCATCTCCTTTTATTAGTGGATTCCATTAGTCCCGACAAAAGCAATCGTAGTGCTGTTATAAATATTCGAAGTATAACGGCAGCTTACAAACCATTACTCATTAGCAATGAGGCAATCAATGCAGTATTCCAACAATTACAGAAAGATAGGAAGCTAGGTCCTGCATTTGTGAGGAAAAATTGGCCAGCTGTTGAGAAGTTCTTGGATTGTAATGGGCATACTACCATGTTGGAATTGTGTCAGGCCCCACCTCAGGAGCGATATCTGCATGATTTGGTTGAGTATGCATTGGATATTCTGCACATTGTTACATTGGTAACTCGCAGTCGTAAGATGATTGTTAATACAACATTAAGCAATAACCGTGCTGGGATAGCTGTAATATTGGAAGCAGCAAATATTGCTTGTGATCACGTGGACCCTGAGATAATTCAACCGGCATTGAATGTTTTAGTCAACCTTGTTTGCCCACCTCCTTCAATCACCAATAAACCATCTCCAGTTATGCAAGGTCAGCAGTTTGTGTCTTCCCAAACCTCAAATGGTCCTCCCTCGGAGACTCGAGATAGAAATGCTGAACCTAATACGATTATGATTGATCGAGCTGTTCATGTCAGCAGCCATATTGATCCTAGGGAAAGGAATGGGGAGTCCAGTGCTGTAGACCGAAGCAGTGTTGTAGCACTTAGTGCACAATCTGTTAATAATACTCCACAGACGCCTGGTCCTGCTGCAAGTTCAGGTTTGGTTGGCGACCGAAGAATATCTCTGGGTGCAGGAGCGGGTTCTGCTGGCCTTGCTGCGCGGCTGGAACATGGATATCGTCAAGCAAGAGAGGCTGTCCGCTCTAATAATGGTATAAAGGTTCTTCTGCACTTCCTCCAACCACGCATATATTTATCTCCTGCTTCTGTGGACTGCCTTCGTGTTCTAGCTTGTCGAGTCCTGCTTGGATTAGCCAGAGATGATACTATTGCACACATATTGACAAAGCTTCAGGTTGGGAAAATGCTATCAGTTCTGATTCAGAATTCAGGTAGTTCGACCCTTGGAACCGAGCAGGGTAGGTGGCAAGCTGAACTTTCCCAGGCTGCAATTGAGCTAATTGGGATTGTGACTAATTTAGGGTGTGCAAGTACATTAGCTGCTACTGATGCAGCTACTCCTACGTTGAGGCGCATAGAAAGAGCAGCTATAGCTGCTGCTACTCCTATTACATACCATTCAAGGGAACTCTTGCTCCTGGTTCATGAACACCTACAGGCATTTGGATTAGCACAAACTGCTTCTACATTGCTTAAAGAGGCTCAGTTGACTCCTTTGCCATCATTGATTTCTCCTACTCTTGCGCAGCAGCCCACTGCACAGGAAGCTTCTTCAACACCAATTCAGTGGCCCTCCGGTCGTACTCCTTCTGGATTTCTCACTCGTGTTCCTGGATTTCTCACTCACAAATTAAAGTTTAATTCAATAGATGAGTATTCCAGCTTGAAAAGTGATGCTATCTCTGCAAAGAAAAAATCACTGACTTTCTCATCATCTTTTGGTTCCCATTCAAAACACCAACCTGTTGACTCTCAGCACACATCGGTCAGAAAATTGTTAAGTACTGGGAGAGAGCCTTCAGATACTAGTATAGTAGAGACTCCGTCTGAATCTGCGGTGAAACATAACATTGATGCTGGATCTCAGTACAAGACTCCAATCACCTTGCCATCAAAACGAAAGTTATCTGATTTAAAGGATATACCAATGTTTTCATCATCTGTAAAGCGGCTAAATGTTGGGGATCAAGGACTTCGCTCTCCTGTTTGTGCGGGTGCTGTTCGTAAAAGTAGTCAGCAGACTAATACTGTTGGGACACCCACTTGTATCCTGAGAAGTCAACAAGGCCGTTGTACGTCTGACTGTGCGGATGAAAGTCAGTACAGTATCTCAAATCCAGGTCAGGGGTCGTCCTCCCAAATATTAAATGATCTTCAGGCCAACAACTCTGAGCGTGTAACATTGGATTCTCTAGTGGTTCAGTATCTGAAGCATCAGCATCGCCAATGCCCCGCTCCCATTACCACACTTCCTCCACTGTCTCTTCTACACCCACATGTTTGTCCGGAACCTAAGCGAAGCCTTGATGCCCCTTCTAATGTGTCAGCTCGACTTGGTACCCGTGAATTTAAGTTTAGGTATGGTGGAGTGCATGGGAATCGCAGGGATCGTCAATTTGTTTTCAGCCGGTTTAGACCATGGCGCACTTGTCGGGACGATGCTGGTGCCTTATTAACGTGCATCACATTTGTTGGAGACTCTTCTCATATTGCTGCTGGGAGCCATAATGGAGAGCTCAAATTTTTTGACTCCAATAACAACAATGTCGTGGAAAGCTTTACAGCCCACCAGTCTCCTTTGACCCTTGTTCAGTCGTTCGTTTCTGGTGAGACACAGACATTGCTTTCCTCAACCTCTCAAGATGTTAAGCTGTGGGATGCAACATCAATTTTAGCTGGTCCTAGTCATTCATTTGAAGGTTGCAAGGCTGCCAGGTTTAGCAATTCTGGTAATGTTTTTGCAGCCTTGTCATCAGATACTGCACGACGGGAAATCCTCTTGTATGATATCCAAACATGTCACATAGAGTCGAGTTTAGTAGATACATATCCATCTTCCACAGGGAAGGGTAATGTTTATCCTTTAATCCACTTCAGCCCTTCTGATTCAATGCTGCTTTGGAATGGTGTTTTGTGGGACCGCCGGGTCTCTGGGCCTGTTCATCGCTTTGATCAGTTCACAGACTATGGGGGTGGAGGCTTTCATCCTGCTGGCAATGAGGTTATTATAAACTCTGAAGTCTGGGATCTGCGCAAGTTCAGACTTCTACGCAGCGTGCCTTCATTAGATCAAACAGCAATAACATTCAATGCACGCGGTGATGTAATGTATGCAATCTTGAGGAGAAATCTTGAGGATGTAATGTCAGCAGTCCACGCACGTCGTGTCAAGCATCCTCTTTTTGCAGCTTTCCGCACAGTGGATGCAATCAATTATTCGGACATTGCTACTACCCCTGTTGATCGCTGTGTTCTTGATTTCGCAACTGAACCAACAGATTCATTTGTTGGGCTGATAACTATGGATGATCAAAATGAGATGTATGCATCAGCCAGAGTATATGAAATTGGTCGATGTAGGCCAACTGATGATGATTCTGATCCTGATGATGCCGAAAGCGAAGATGAGGAAGATGATGACGATGATGATGATGGTGATGATGAAGATCCTCTTTTAGGCCCTGGTCTCGGCAGAGAGAGTGATAGTGATGACATGAGCAATGATGACTATGATAGTGCAAGTGACATTGATGATGAAGATGCAGATTTCATTTTGGATGATTTAGACTTTGACGGAGGAACAGGCTTATTAGAGATTGTGGGAGACCGAGATGAGGATGATGATGATAGTCAAGAACTTGAATCTGCAAGTAGTGACGATGAGGACTTTGATGATAATGACTTTGGTTATTAA 5820 0.4486 MDGQSQVQPQPPPPHGEDDDDSKKEEEELLIDKVNKLMAKITSNPDNPKPSVLHALASILETHESRYMEESGHSSSSNARAAHLIGRLGSVIRENDDFFELISAKFLLETRYSTAVQAAAARLILCCSLTWIYPHVFEESAVENITNWVKDDNLIFSGEEQNQREASVSEMLKTYSTGLLAVCLVGDVKVVEDVLTCGLSAKLMRYLRLRVLGETSGSQRDTSPLTESRHSSGNTLVRGNDDGHSRFRQLQELSHLDDARVFDERSLDDLTLERERGQDRNTSGQTCQEISWIDGEPPDVLNEGADICEVDSDGEDRWHCRDIRDGRIKYDEQEDNARDDSSRQRANRGGGRSRGKGKVNEGTVESEPVLSPPGPGSRLGQGCSVRDRSIVRNADVRRVPDSKKTLGRITSEASIFERTDNDDCFQGCHIGSKDISDLVRKAVQAADAEARSANAPEEAVRAAGDAAADFVKTAALEEYESTNDEEAAVLAASRAASTVIDAASAPEVSRNSVCLNNEAENASESCEDVEDYFIPYVQSLAKLREKYCIQCLELLGQYVEALGPVLHENGVDVCLALLQQNSKHQEASKVALLLPDVMKLICVLAAHKKFAADFVDRGGMQKLLAVPRLSQTFYGLSSCLVTIGSVQGLMEQVCALPSNLVYHVVELALQLLECNLDQARQKAAQFFAAAFVFRAVIDVFDSQDGLQKLLGLLNDVASVRSGVTSGALGLSNLGSLRNDRSSAEALTSSEKLVAYETCVALQKYFRAHLLLLVDSISPDKSNRSAVINIRSITAAYKPLLISNEAINAVFQQLQKDRKLGPAFVRKNWPAVEKFLDCNGHTTMLELCQAPPQERYLHDLVEYALDILHIVTLVTRSRKMIVNTTLSNNRAGIAVILEAANIACDHVDPEIIQPALNVLVNLVCPPPSITNKPSPVMQGQQFVSSQTSNGPPSETRDRNAEPNTIMIDRAVHVSSHIDPRERNGESSAVDRSSVVALSAQSVNNTPQTPGPAASSGLVGDRRISLGAGAGSAGLAARLEHGYRQAREAVRSNNGIKVLLHFLQPRIYLSPASVDCLRVLACRVLLGLARDDTIAHILTKLQVGKMLSVLIQNSGSSTLGTEQGRWQAELSQAAIELIGIVTNLGCASTLAATDAATPTLRRIERAAIAAATPITYHSRELLLLVHEHLQAFGLAQTASTLLKEAQLTPLPSLISPTLAQQPTAQEASSTPIQWPSGRTPSGFLTRVPGFLTHKLKFNSIDEYSSLKSDAISAKKKSLTFSSSFGSHSKHQPVDSQHTSVRKLLSTGREPSDTSIVETPSESAVKHNIDAGSQYKTPITLPSKRKLSDLKDIPMFSSSVKRLNVGDQGLRSPVCAGAVRKSSQQTNTVGTPTCILRSQQGRCTSDCADESQYSISNPGQGSSSQILNDLQANNSERVTLDSLVVQYLKHQHRQCPAPITTLPPLSLLHPHVCPEPKRSLDAPSNVSARLGTREFKFRYGGVHGNRRDRQFVFSRFRPWRTCRDDAGALLTCITFVGDSSHIAAGSHNGELKFFDSNNNNVVESFTAHQSPLTLVQSFVSGETQTLLSSTSQDVKLWDATSILAGPSHSFEGCKAARFSNSGNVFAALSSDTARREILLYDIQTCHIESSLVDTYPSSTGKGNVYPLIHFSPSDSMLLWNGVLWDRRVSGPVHRFDQFTDYGGGGFHPAGNEVIINSEVWDLRKFRLLRSVPSLDQTAITFNARGDVMYAILRRNLEDVMSAVHARRVKHPLFAAFRTVDAINYSDIATTPVDRCVLDFATEPTDSFVGLITMDDQNEMYASARVYEIGRCRPTDDDSDPDDAESEDEEDDDDDDDGDDEDPLLGPGLGRESDSDDMSNDDYDSASDIDDEDADFILDDLDFDGGTGLLEIVGDRDEDDDDSQELESASSDDEDFDDNDFGY* 1940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3813 1939 MobiDBLite consensus disorder prediction 216 239 - -
Lja1g3813 1939 MobiDBLite consensus disorder prediction 1873 1896 - -
Lja1g3813 1939 MobiDBLite consensus disorder prediction 1835 1859 - -
Lja1g3813 1939 Gene3D - 1512 1837 IPR015943 GO:0005515
Lja1g3813 1939 PANTHER BNAA03G51310D PROTEIN 21 253 - -
Lja1g3813 1939 PANTHER BNAA03G51310D PROTEIN 321 953 - -
Lja1g3813 1939 SMART Lish 1175 1207 IPR006594 GO:0005515
Lja1g3813 1939 MobiDBLite consensus disorder prediction 1910 1939 - -
Lja1g3813 1939 SMART WD40_4 1600 1638 IPR001680 GO:0005515
Lja1g3813 1939 SMART WD40_4 1555 1595 IPR001680 GO:0005515
Lja1g3813 1939 SMART WD40_4 1512 1552 IPR001680 GO:0005515
Lja1g3813 1939 MobiDBLite consensus disorder prediction 932 959 - -
Lja1g3813 1939 MobiDBLite consensus disorder prediction 216 243 - -
Lja1g3813 1939 MobiDBLite consensus disorder prediction 930 963 - -
Lja1g3813 1939 MobiDBLite consensus disorder prediction 1217 1238 - -
Lja1g3813 1939 ProSiteProfiles LIS1 homology (LisH) motif profile. 1175 1207 IPR006594 GO:0005515
Lja1g3813 1939 PANTHER BNAA03G51310D PROTEIN 990 1278 - -
Lja1g3813 1939 SUPERFAMILY WD40 repeat-like 1514 1743 IPR036322 GO:0005515
Lja1g3813 1939 Coils Coil 662 689 - -
Lja1g3813 1939 MobiDBLite consensus disorder prediction 1827 1939 - -
Lja1g3813 1939 PANTHER VPRBP PROTEIN-RELATED 1267 1823 IPR033270 GO:0016567
Lja1g3813 1939 PANTHER VPRBP PROTEIN-RELATED 21 253 IPR033270 GO:0016567
Lja1g3813 1939 PANTHER VPRBP PROTEIN-RELATED 321 953 IPR033270 GO:0016567
Lja1g3813 1939 MobiDBLite consensus disorder prediction 331 347 - -
Lja1g3813 1939 MobiDBLite consensus disorder prediction 1 26 - -
Lja1g3813 1939 PANTHER BNAA03G51310D PROTEIN 1267 1823 - -
Lja1g3813 1939 PANTHER VPRBP PROTEIN-RELATED 990 1278 IPR033270 GO:0016567
Lja1g3813 1939 MobiDBLite consensus disorder prediction 331 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3813 Lja-Chr1 48081318 48100858 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3813 K11789 - gmx:100796030 2663.26