Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3807 ATGGCCATTCTCCGCTGCACATTGACACCAACACTTCCATTTCTTTCTCTGAAAACCACCGTCACCGCCGCACCCAACTCCACGTTAACATTCCTATTACAAACACGAACTCGCTTCCCCGCAGCCATGACCTCCAGTTCCGAACCCGTGACTCTTCACCAGGTGCCAGAGCAAGATGCCAACAATAACATCATCGACCAAACATTTCGAAAGTACACCTCCAACAACGCCAAGAGGAGTGGCAAAGGAACCGCCATTGTTTGGTTCAGGAACGATCTCAGAGTGTTGGATAATGAAACTCTTTATAAAGCATGGGTTTCCTCTGAAACTTTGTTACCTGTTTACTGTGTTGATCCTCGACTCTTCGCCACCACTTATCACTTCGGATTTCAGAAAACTGGGGCATTGAGAGCCCAATTTCTCATCGAATGCTTGGCTGACTTGAGGGACAATTTGATGAAACGGGGAGTTAATTTGCTAATTCGACACGGAAAGCCTGAAGATGTTCTTCCTTCTCTTGCAAAAGCTTTTGGAGCTCATACAGTCTATGCGCAGAAAGAAACTTGTAGTGAGGAGCTAAACGTTGAAAGTTCAGTGATCAAGGGACTTCAACAAGTGGTGATACCACCTGAGCAATCCGCGGGTCTTATAAATTCAAGCAATCACCCCAAGTTGCAATTTATTTGGGGCACCACCATGTACCACCTTGATGATCTCCCTTTTGATGCCGCTTGTTTGCCGGATGTTTATACTCAATTTCGTAAGACTGTTGAAGCCAAATGTACCGTACGCTCATGCATTAAACTTCCAGCATCTCTTGGACCTCCTCCCCTAATTGAGGATTGGGGAAGTCTTCCTTCGCTGGAGCAGCTGGGACTTTGCTCACAGAATGTTAGCAAAGGGATGAAGTTTGTGGGGGGTGAAACTGCGGCATTAAGCAGAGTATATGAATACTTTTGGAAAAAGGATTTGCTAAAGGTATATAAAGAGACCCGAAATGGGATGTTAGGGCCTGATTATTCTACTAAATTCTCCCCCTGGCTTGCCTCAGGAAGTTTGTCTCCTCGCTTCATTCATGAAGAGGTGAAGAGATATGAGAATGAAAGACTAGCCAATAGTTCTACCTACTGGGTTTTGTTTGAGTTGATATGGAGGGATTACTTTCGGTTTATATCGGTGAAATATGGAAATTCACTTTTCCATTTAGGTGGCCCTAGGAAAGTTCAGAATAGATGGAGCCAAGACAGGAAATTGTTTGAATCCTGGAGAGATGGTTGTACAGGGTATCCTCTGATAGATGCCAACATGAAAGAACTATCAACTACAGGGTTTATGTCAAACCGAGGACGGCAGATTGTATGTTCCTTTCTAGTCCGTGACATGGGCATAGATTGGCGCATGGGAGCTGAATGGTTTGAGACATGTCTTCTGGATTATGATCCATGCTCTAATTATGGAAACTGGACTTATGGATCAGGAGTTGGAAATGATCCAAGAGAAGACCGTTATTTCAGCATCCCAAAACAAGCACAAACATATGACCCTGAAGGTGAATATGTTGCATACTGGTTGCCACAGTTACGAACTATCCCAAAAGATAAAAGGAACTTTCCTGGAAATTTATACATTCGTCAAATTGTGCCTCTCAAATTTGGAACAGCTAGTCCTAGTAGACACCATAAGGAGGACAAGTCACATGGTGCAAGAAGATCCAATGATAGAGGAGGTGAAAGAAGATGGAACATGAGGTGA 1752 0.4389 MAILRCTLTPTLPFLSLKTTVTAAPNSTLTFLLQTRTRFPAAMTSSSEPVTLHQVPEQDANNNIIDQTFRKYTSNNAKRSGKGTAIVWFRNDLRVLDNETLYKAWVSSETLLPVYCVDPRLFATTYHFGFQKTGALRAQFLIECLADLRDNLMKRGVNLLIRHGKPEDVLPSLAKAFGAHTVYAQKETCSEELNVESSVIKGLQQVVIPPEQSAGLINSSNHPKLQFIWGTTMYHLDDLPFDAACLPDVYTQFRKTVEAKCTVRSCIKLPASLGPPPLIEDWGSLPSLEQLGLCSQNVSKGMKFVGGETAALSRVYEYFWKKDLLKVYKETRNGMLGPDYSTKFSPWLASGSLSPRFIHEEVKRYENERLANSSTYWVLFELIWRDYFRFISVKYGNSLFHLGGPRKVQNRWSQDRKLFESWRDGCTGYPLIDANMKELSTTGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGSGVGNDPREDRYFSIPKQAQTYDPEGEYVAYWLPQLRTIPKDKRNFPGNLYIRQIVPLKFGTASPSRHHKEDKSHGARRSNDRGGERRWNMR* 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3807 583 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 82 280 IPR036155 -
Lja1g3807 583 PRINTS DNA photolyase signature 447 465 IPR002081 -
Lja1g3807 583 PRINTS DNA photolyase signature 486 500 IPR002081 -
Lja1g3807 583 PRINTS DNA photolyase signature 427 443 IPR002081 -
Lja1g3807 583 Pfam DNA photolyase 85 267 IPR006050 -
Lja1g3807 583 MobiDBLite consensus disorder prediction 555 583 - -
Lja1g3807 583 Gene3D - 231 400 - -
Lja1g3807 583 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 83 216 IPR006050 -
Lja1g3807 583 TIGRFAM crypto_DASH: cryptochrome, DASH family 84 526 IPR014133 GO:0003913|GO:0006281
Lja1g3807 583 Gene3D HUPs 50 230 IPR014729 -
Lja1g3807 583 PANTHER CRYPTOCHROME DASH 70 557 - -
Lja1g3807 583 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 302 538 IPR036134 -
Lja1g3807 583 MobiDBLite consensus disorder prediction 553 583 - -
Lja1g3807 583 Pfam FAD binding domain of DNA photolyase 380 535 IPR005101 -
Lja1g3807 583 PANTHER CRYPTOCHROME 70 557 IPR002081 -
Lja1g3807 583 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 401 555 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3807 Lja-Chr1 47922947 47928089 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3807 K25656 - gmx:100783312 977.237