Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3799 ATGGAGGTTTCATCATCGTCATCATCTGCAATCGCACAACAAACATGGGAGCTCGAGAACAACATAATCCCGATGGACACTCCTTCAGACGATTCCATCTTCTACTACGACGAAGCTGGCCAGAACGAGTTCCAGCGTGAGAAGCCATGGGCAAACGACCCTCACTACTTCAAGCGCGTCAAGATCTCCGCACTCGCGCTTCTCAAGATGGTTGTTCACGCGCGCTCCGGCGGCACCATCGAAGTCATGGGCCTCATGCAAGGAAAAACCGACGCCGATTCGATCATCGTCATGGATGCTTTCGCTTTGCCCGTTGAAGGCACTGAAACCCGTGTCAATGCCCAAGCTGATGCGTATGAATACATGGTTGATTATTCTCAGACCAATAAGCAGGCTGGGAGGTTAGAAAACGTTGTGGGGTGGTACCATTCTCATCCGGGTTACGGTTGTTGGCTTTCGGGTATCGATGTTTCTACGCAGATGCTGAATCAGCAGTTTCAGGAGCCTTTTCTTGCTGTTGTGATTGATCCTACTAGGACTGTTTCTGCTGGGAAGGTTGAGATTGGGGCTTTCAGGACTTACCCTGAAGGTTATAAGCCTCCAGATGAGCCTATTTCTGAGTATCAGACCATTCCTTTGAATAAAATTGAAGACTTTGGTGTCCATTGTAAACAGTATTATTCCTTGGATATCACTTACTTCAAGTCCTCCCTTGATTCACACCTGTTGGATTTGCTGTGGAACAAATATTGGGTGAATACACTGTCATCTTCTCCTCTGTTGGGTAATGGAGATTACGTTGCTGGACAAATCTCGGATTTAGCTGAAAAGTTAGAGCAAGCAGAGAATCAGTTGGCGCACTCACGCTTTGGGTCACTGATAGCACCCACACCTAGAAAGAAAGAAGAAGAATCTCCACTTGCTAAGATTACTCGTGACAGTGCGAAAATAACTGTGGAGCAAGTGCATGGTCTAATGTCGCAGGTAATCAAGGATATTCTGTTCAACTCAGTTCACCAAGCAAACAAGTCTCGCACAGAAACAACTTCTGACCCTGAACCAATGATTGAAAGCTGA 1077 0.4661 MEVSSSSSSAIAQQTWELENNIIPMDTPSDDSIFYYDEAGQNEFQREKPWANDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDADSIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYKPPDEPISEYQTIPLNKIEDFGVHCKQYYSLDITYFKSSLDSHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAENQLAHSRFGSLIAPTPRKKEEESPLAKITRDSAKITVEQVHGLMSQVIKDILFNSVHQANKSRTETTSDPEPMIES* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3799 358 PANTHER BNAC07G13420D PROTEIN 24 351 IPR037740 GO:0004222|GO:0008180
Lja1g3799 358 CDD MPN_RPN11_CSN5 49 321 - -
Lja1g3799 358 Pfam Cop9 signalosome subunit 5 C-terminal domain 256 336 IPR040961 -
Lja1g3799 358 SMART pad1_6 59 196 IPR000555 GO:0005515|GO:0008233|GO:0008237
Lja1g3799 358 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED 24 351 - -
Lja1g3799 358 ProSiteProfiles MPN domain profile. 60 197 IPR037518 -
Lja1g3799 358 SUPERFAMILY JAB1/MPN domain 59 196 - -
Lja1g3799 358 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 57 168 IPR000555 GO:0005515|GO:0008233|GO:0008237
Lja1g3799 358 Gene3D Cytidine Deaminase, domain 2 4 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3799 Lja-Chr1 47827540 47832256 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3799 K09613 - gmx:100784909 681.404