Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3759 ATGGGTATAACAGAAGTATGTTCCAGATTCATTGGGGACTTTTTTAAAACACTCAAAAGCTCACCACCAAGCTCAATCTCTCACCTTGATCAACCTACTTGCAAGGCCCAGGATATGATCAAACTTGATGAAAAGATGGTCCGTGCTCTTGTCACTGTGTTTGGCATGGAAAACAATGGCAGAATCAAGAAGGAAAATGCTCGGAAAGTGGTTGAAAAGCTTGGTTTAATGTATGGTAATTCTGAGGAGGATAAGAATAAGGTCTCAGAATTTGAGCTACCTTGTGAGGGTGGTTTCCATGATGATGAAGTGCCTGTGGAAGAGGTTCTTGGTGAGTTAGAGGACATGTCGAAGCGCAGCGAGTTGCTGCGCGAAGCCTTCAAAATCTTTGATGAGGATGGTGATGGATACATTGATGCCTTGGAGCTGAAGAGGGTGCTTGATTGCTTGGGATTGGACAAAGGTTGGGATATGAACACAATTGAAAGCATGGTGAAGGTTGTGGATTTGAACTTTGATGGCAAGGTTGATTTTACTGAGTTTGAATTGATGATGGGATCGTAG 564 0.4291 MGITEVCSRFIGDFFKTLKSSPPSSISHLDQPTCKAQDMIKLDEKMVRALVTVFGMENNGRIKKENARKVVEKLGLMYGNSEEDKNKVSEFELPCEGGFHDDEVPVEEVLGELEDMSKRSELLREAFKIFDEDGDGYIDALELKRVLDCLGLDKGWDMNTIESMVKVVDLNFDGKVDFTEFELMMGS* 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3759 187 Pfam EF-hand domain pair 122 185 IPR002048 GO:0005509
Lja1g3759 187 ProSiteProfiles EF-hand calcium-binding domain profile. 118 153 IPR002048 GO:0005509
Lja1g3759 187 SMART efh_1 160 187 IPR002048 GO:0005509
Lja1g3759 187 SMART efh_1 122 150 IPR002048 GO:0005509
Lja1g3759 187 CDD EFh 123 181 IPR002048 GO:0005509
Lja1g3759 187 Coils Coil 106 126 - -
Lja1g3759 187 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 112 185 - -
Lja1g3759 187 SUPERFAMILY EF-hand 45 185 IPR011992 -
Lja1g3759 187 PANTHER CALCIUM-BINDING PROTEIN CML42 112 185 - -
Lja1g3759 187 Gene3D - 25 187 - -
Lja1g3759 187 ProSitePatterns EF-hand calcium-binding domain. 131 143 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3759 Lja-Chr1 47189932 47190851 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3759 19 185 EF-hand Containing Proteins AT5G44460 35.227 9.11e-18 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3759 - - gmx:100527700 259.996