Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3755 ATGGCAACCAGAACCACCACGCAACTCTTCGTCAGAGAACTCGAAAACCGTTTCGTCGCCGCCTTGAGAAACTGCGTGAAAATAACCCAACTGAAGAAGATTCATGCCCACATCGTGAAACTTTCGCTTTCACAGAGCAACTTCGTGGCCACGAGAATGGTGGATTTGTGCGACAACATTGGCCAAGTGGGTTACGCTACGTTGCTCTTCCAGCAGCTAGTTGAACCAAACGTGTTCTCCTACAACGTGATGATCAAAACGTATACACACAATCACCACCATTCTCAAGCAATCACTCTCTTCATCCAAATGCTGAGAGAGCCAACGAGATCAGCAATGCCAGACAGATTCACGTTCCCGTTCGTGATAAAGTCATGTGCGGGGCTTCTGTACCATCGTCTTGGTCAGCAAATTCATGGGCACGTTTGCAAGTTTGGACCGAATTCACATTCCATAACAGAGAATGCGCTTATTGATATGTATACGAAGTTTGGTGATTTGAACAATGCGTACCAAGTGTTTGAGGAAATGACTGAGAGAGATGCAATTTCATGGAATAGTCTTATATCTGGGCATGTGAGGTTGGGGCAGATGAAGAGTGCAAGGGTGCTGTTTGATGAAATGCCGAGTAGGACAATCGTGTCGTGGACTACTATGATTACTGGGTATACCAGAACAGGTTGTTATGGTGATGCATTGGACATTTTCCGCAGGATGCAAATGGTGGGGATTGAACCTGATAAGATTAGTATTATAGCTGTTCTGCCTGCATGTGCTCAGCTTGGAGCACTTGAGGTTGGGAAATGGATTCACATGTATTCGGATAAAAAAGGGTTTTTGAAGCAGAATGAGCTGTGTAATGCCCTGATTGAAATGTATGCCAAGTGTGGTTGCATTGATGAAGCTTGGCGCGTATTTGATCAGATGGCGGAGAAGAATGTTATTTCTTGGAGTACCATGATCGGAGGGCTAGCTAATCATGGAAAAGGTCATGCGGCAATTGAACTCTTTCAAGACATGCAGAAAGCAAAAGTGGGTCCGAATGAGATAACTTTCCTTAGTGTTTTGTCGGCTTGCGTTCATGCTGGCTTGTGGGATGAGGGGCTGAAATATTTTGCTGTTATGAGGATGGATTATCACATGGAGCCTGAAATTGAGCACTATGGTTGCCTAGTTGATCTTCTAGGACGTTCGGGACATCTGGATCGGGCTCTAGATACCATATTGAATATGCCGATAAAACCGGATTCAAGGATATGGAACTCTTTGTTAAGCTCTTGCAGGATTCATCGCAATCTTGAGATTGCCAATATTGCAATGGAACAACTTGCAGAGCTTGAGCCAGAGGAATCAGGGAACTATGTTCTGCTGGCTAACATATATGCAGAACTTGGCGAGTGGGAAGGTGTATCAGAGATCAGGAAACTCATAAGAAACAAGAGGATAAAGAAAACCCCGGGGTCTAGTTCAATTGAGGTTAACAATGTGGTTCAAGAGTTTGTATCAGGAGACAATTCAAAGCCCTTCTCACAAGATGTCTTTTGTGTCCTAGAAGGGCTCGCTTTACACCGAACTAGAATGGACGAGTTCATGGAATTTGTGGAAGAAGATGAAGATCAAGTTCATAGTAACATTATGTAG 1641 0.4412 MATRTTTQLFVRELENRFVAALRNCVKITQLKKIHAHIVKLSLSQSNFVATRMVDLCDNIGQVGYATLLFQQLVEPNVFSYNVMIKTYTHNHHHSQAITLFIQMLREPTRSAMPDRFTFPFVIKSCAGLLYHRLGQQIHGHVCKFGPNSHSITENALIDMYTKFGDLNNAYQVFEEMTERDAISWNSLISGHVRLGQMKSARVLFDEMPSRTIVSWTTMITGYTRTGCYGDALDIFRRMQMVGIEPDKISIIAVLPACAQLGALEVGKWIHMYSDKKGFLKQNELCNALIEMYAKCGCIDEAWRVFDQMAEKNVISWSTMIGGLANHGKGHAAIELFQDMQKAKVGPNEITFLSVLSACVHAGLWDEGLKYFAVMRMDYHMEPEIEHYGCLVDLLGRSGHLDRALDTILNMPIKPDSRIWNSLLSSCRIHRNLEIANIAMEQLAELEPEESGNYVLLANIYAELGEWEGVSEIRKLIRNKRIKKTPGSSSIEVNNVVQEFVSGDNSKPFSQDVFCVLEGLALHRTRMDEFMEFVEEDEDQVHSNIM* 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3755 546 Pfam PPR repeat family 312 360 IPR002885 -
Lja1g3755 546 Pfam PPR repeat family 76 127 IPR002885 -
Lja1g3755 546 Pfam PPR repeat family 212 259 IPR002885 -
Lja1g3755 546 TIGRFAM PPR: pentatricopeptide repeat domain 315 349 IPR002885 -
Lja1g3755 546 TIGRFAM PPR: pentatricopeptide repeat domain 214 247 IPR002885 -
Lja1g3755 546 TIGRFAM PPR: pentatricopeptide repeat domain 183 211 IPR002885 -
Lja1g3755 546 TIGRFAM PPR: pentatricopeptide repeat domain 285 313 IPR002885 -
Lja1g3755 546 Pfam E motif 430 492 IPR046848 -
Lja1g3755 546 PANTHER OS05G0439300 PROTEIN 11 535 - -
Lja1g3755 546 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 282 312 IPR002885 -
Lja1g3755 546 Pfam PPR repeat 183 211 IPR002885 -
Lja1g3755 546 Pfam PPR repeat 155 180 IPR002885 -
Lja1g3755 546 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 181 211 IPR002885 -
Lja1g3755 546 SUPERFAMILY TPR-like 159 472 IPR011990 GO:0005515
Lja1g3755 546 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 212 246 IPR002885 -
Lja1g3755 546 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 11 535 - -
Lja1g3755 546 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 150 180 IPR002885 -
Lja1g3755 546 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 77 111 IPR002885 -
Lja1g3755 546 Gene3D Tetratricopeptide repeat domain 282 512 IPR011990 GO:0005515
Lja1g3755 546 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 313 347 IPR002885 -
Lja1g3755 546 Gene3D Tetratricopeptide repeat domain 133 268 IPR011990 GO:0005515
Lja1g3755 546 Gene3D Tetratricopeptide repeat domain 1 131 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3755 Lja-Chr1 47148808 47150448 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3755 25 520 Glycoside Hydrolase AT3G49170 31.412 1.68e-84 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3755 - - cam:101511241 863.988