Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3754 ATGAATGAGCGTCGGTTATTCGCTGATGTTCTGAGGAAGTGTTCGAAGCATCGGTTGCTTGATCAGGGAAAGCGAGTACATGGGGTTGTGGAGAAACTTGGGTTTGGGGATGATTTGGTTTTAAGCAATGATTTGATAGATATGTATGCAAAGTGTGGTAATGTGGGCTTTGCTTTTAAGGTGTTTGATAGAATGCCGCAAAGAAATGTTGTGTCTTGGACAGCTCTCATGTGTGGTTATCTGCAGAATGGTGATGCCAGAACTTCCTTGCTCTTGTTCTCTAAAATGGGCTGTTCGCCGGTTAAGCCGAATGAGTTCACGCTTTCGACGAGTCTAAAAGCGTCGGGCATTTTGGGAGTCCTTGAGAATGGAATGCAGATTCATGGGGTTTGTGCAAAATCTAATTTTGATTCGGTACCTGTTGTGGGGAATTCTTTGATTGACATGTACTCCAAGTGTGGTAAGGTTAATGAAGCAGCCAGGGTATTTAACACTATGCCAGTGAGAAATCTTGTGAGCTGGAATGCAATGATTGCTGGATACACTCATGAGACGAATGGTAAAGAGGCTTTGAATCTTTTTCAAAAAATGCAAGAGGAGGGGGAAGTTCCTGATGAGTATACATATTCAAGCATGTTGAAGGCGTGTAGTTGTCTTGGGGCAGTGGGAGGAGGAAAGCAAATTCATGCTGCGTTAATTAGACAGGGGTTTCCTTACTTTGCTCAATCAGCTGTTGCAGGTGCCCTGGTTGATCTATATGTCAAATGTAAGCGCATAGCTGAAGCTAGGAGCGTGTTCGATCGGATTGAACAGAAGAATGTCATGTCTTGGAGCACACTAATTACTGGTTATGCACAAGATAATTTGCCAGAAGCTATGGAATTGTTTCAGCAGTTGAGAGAGAGCAAACATAAAGTGGATGGTTTTGTACTCTCGAGTCTCGTAGGTGCATTTGCTGATTTGGCCCTTGTAGAACAGGGGAAGCAATTGCATGCTTATACCATCAAAGTCCCTTATGGCTTGGAAATATCAGTGGCTAATTCAGTGTTGGATATGTACATGAAATGTGGTTTGACAGATCATGCTGAAGCGTTTTTCAGAGAGATGCCGGCAAAGAATGTGGTTTCTTGGACAGTTATGATCACTGGTTATGGAAAACATGGTATTGGGACTAAAGCTGTAGAAATTTTCAATGAAATGCAGGTGTGTGGATTTGAACCTGATAGTGTAACTTACTTAGCTGTGCTCTCAGCTTGCAGCCATTCTGGACTCATCAAAGAAGGTAAACAACACTTCTCAAGATTATGTAGTAATCCTAAGATCAAACCACAAGTAGAGCATTACGCTTGCATGGTTGATCTTCTAGGACGAGGTGGACGCTTAAAGGAAGCAAAGGATCTCATTGAGAACATGACCATGAAGCCAAATGTTGGCATATGGCAGACATTGCTTAGTGTTTGCAGAATGCATGGAGATGTGGAGATGGGGAAACAAGTGGGAGAGATACTCATGAGACTAGATGCTAATAATCCAATCAACTATGTCATGTTGTCAAATATCTATGCTGATGCAGGATACTGGAAAGAGAGTGAGAAAATAAGAGATGCTGGGAAGAGAAAGGGATTGAAGAAAGAGGCAGGTCGTAGTTGGTAG 1653 0.4253 MNERRLFADVLRKCSKHRLLDQGKRVHGVVEKLGFGDDLVLSNDLIDMYAKCGNVGFAFKVFDRMPQRNVVSWTALMCGYLQNGDARTSLLLFSKMGCSPVKPNEFTLSTSLKASGILGVLENGMQIHGVCAKSNFDSVPVVGNSLIDMYSKCGKVNEAARVFNTMPVRNLVSWNAMIAGYTHETNGKEALNLFQKMQEEGEVPDEYTYSSMLKACSCLGAVGGGKQIHAALIRQGFPYFAQSAVAGALVDLYVKCKRIAEARSVFDRIEQKNVMSWSTLITGYAQDNLPEAMELFQQLRESKHKVDGFVLSSLVGAFADLALVEQGKQLHAYTIKVPYGLEISVANSVLDMYMKCGLTDHAEAFFREMPAKNVVSWTVMITGYGKHGIGTKAVEIFNEMQVCGFEPDSVTYLAVLSACSHSGLIKEGKQHFSRLCSNPKIKPQVEHYACMVDLLGRGGRLKEAKDLIENMTMKPNVGIWQTLLSVCRMHGDVEMGKQVGEILMRLDANNPINYVMLSNIYADAGYWKESEKIRDAGKRKGLKKEAGRSW* 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3754 550 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 38 72 IPR002885 -
Lja1g3754 550 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 373 407 IPR002885 -
Lja1g3754 550 TIGRFAM PPR: pentatricopeptide repeat domain 45 71 IPR002885 -
Lja1g3754 550 TIGRFAM PPR: pentatricopeptide repeat domain 347 375 IPR002885 -
Lja1g3754 550 TIGRFAM PPR: pentatricopeptide repeat domain 375 409 IPR002885 -
Lja1g3754 550 TIGRFAM PPR: pentatricopeptide repeat domain 144 170 IPR002885 -
Lja1g3754 550 TIGRFAM PPR: pentatricopeptide repeat domain 172 206 IPR002885 -
Lja1g3754 550 TIGRFAM PPR: pentatricopeptide repeat domain 71 104 IPR002885 -
Lja1g3754 550 Gene3D Tetratricopeptide repeat domain 435 550 IPR011990 GO:0005515
Lja1g3754 550 Pfam E motif 490 550 IPR046848 -
Lja1g3754 550 PANTHER - 1 550 - -
Lja1g3754 550 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN-RELATED 1 550 - -
Lja1g3754 550 Gene3D Tetratricopeptide repeat domain 119 222 IPR011990 GO:0005515
Lja1g3754 550 Gene3D Tetratricopeptide repeat domain 2 118 IPR011990 GO:0005515
Lja1g3754 550 Gene3D Tetratricopeptide repeat domain 330 430 IPR011990 GO:0005515
Lja1g3754 550 Gene3D Tetratricopeptide repeat domain 239 329 IPR011990 GO:0005515
Lja1g3754 550 Pfam PPR repeat 448 472 IPR002885 -
Lja1g3754 550 Pfam PPR repeat 276 302 IPR002885 -
Lja1g3754 550 Pfam PPR repeat 248 274 IPR002885 -
Lja1g3754 550 Pfam PPR repeat family 372 420 IPR002885 -
Lja1g3754 550 Pfam PPR repeat family 68 114 IPR002885 -
Lja1g3754 550 Pfam PPR repeat family 170 216 IPR002885 -
Lja1g3754 550 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 170 204 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3754 Lja-Chr1 47147153 47148805 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3754 7 550 Glycoside Hydrolase AT3G49170 38.156 3.88e-129 396
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3754 - - lja:Lj1g3v2035170.1 1112.83