LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja1g3743	ATGGCTCCACCGCAGTCTCAGCGATCTCCATCGCCCTCTCAACCATCAGGGAAGAGTGAAGTGTCCGATTTGAAATTACAGCTCCGGCAGCTGGCTGGGAGCCGAGCTCCGGGTACTGATGATTTGAAGAGGGATCTCTTCAAGAAGGTGATATCCAACATGACTATAGGCATTGATGTATCGTCTCTCTTTGGGGAGATGGTGATGTGCTCAGCAACATCAGATATTGTTCTGAAAAAGATGTGCTACCTGTATGTTGGGAACTATGCCAAGGGCAACCCTGAACTCGCTCTTTTGACAATTAATTTTCTGCAAAGAGATTGCAAGGACATGGATCCGATGATTCGGGGACTAGCACTGAGGAGTCTGTGTACACTCCGAGTGGAAAACTTGGTGGAGTATTTGGTTGGGCCATTAGGGTCTGGGTTGAAGGACAATAATAGTTATGTCAGGATGGTGGCGGTTATTGGGGTTTTGAAACTATATCATATATCAGCTTCCACTTGCATCGATGCAGATTTTCCAGCAACGCTGAAGCATTTGATGCTTAATGACCCAGATACTCAGGTAGTTGCAAATTGTCTGTCTGCTTTACAAGAAATCTGGACCTTAGAGTCAGGCTCGTCAGAGGAAGCAGCCAGAGAGAGAGAAGCTGTGCATAGCAAGCCAGTTATATATTATCTTTTGAATCGCATTAAGGAATTTAGTGAATGGTCTCAATGTGTTGTGCTTGAATTGGTGGCCAAGTATGTTCCATCAGATAACAGTGAAATATTTGATATAATGAATCTCCTTGAAGATAGACTCCAGCATGCAAACGGTGCTGTTGTCTTGGCAACTACAAAAGTATTTCTACATTTGACTTTATCTATGGCTGATGTTCACCAGCAGGTTTATGAGCGTATCAAAGCCCCTCTGTTAACTCAAGTGAGCTCAGGAAGTCCAGAACAATCTTATGCAATTTTAAGCCACCTACATCTTTTGGTCATGCGTGCACCTTATATATTTTCCTCAGATTACAAACATTTCTATTGCCAGTATAATGAGCCATCATATGTCAAAAAGTTGAAGCTTGAAATGCTGACAGCAGTTGCAAATGAAAGTAACACCTATGAGATAGTGACAGAATTATGTGAATATGCTGCAAATGTTGACATTCCAATTGCAAGGGAATCAATACGGGCTGTTGGAAAGATAGCATTGCAACAGTATGATGTCAACGCTATTGTTGACCGTCTTCTACAGTTTCTTGAGATGGAAAAGGACTATGTTACTGCTGAAGCTCTGGTGCTTGTGAAAGATCTGTTGAGAAAATATCCACAATGGAGTCAAGATTGTATTGCTGTTGTTGGGAATATCAGTAGCAAAAATGTCCAAGAACCCAAGGCTAAGGCAGCTCTCATATGGATGCTGGGGGAATATTCTCAAGACATGAATGATGCTCCATATGTATTGGAGAGCCTTGTTGAAAATTGGGACGAGGAGCATTCTGCTGAGGTTCGCTTACATCTTCTTACTGCAGTTATGAAGTGTTTCTTTAAGAGACCCCCTGAGACTCAGAAAGCATTAGGAGCTGCACTAGCTGCTGGTCTTGCTGACTTTCACCAGGATGTTCATGATAGGGCCTTATTTTATTACAGGCTTCTGCAATACAAAGTGTCAGTGGCAGAAAGCGTGGTGAATCCCCCAAAGCAAGCAGTTTCAGTATTTGCTGATACTCAGAACAGTGAAGTCAAAGATCGCATATTTGATGAATTCAACAGTTTGTCTGTTGTATACCAAAAGCCTTCTTATATGTTCACTGATAAGGAACACCGAGGGATACTTGAATTTTCAGATGAACTTGGAAATCTATCTATTAGTGTAGAATCTGGAGATTCTGTTGTTCCAGCTCAGAGGGTGGAGGAAAATGACAAGGATCTGCTTCTAAGTACCACAGAAAAAGATGAAGTTAGAGATCCCGGTAGCAATGGTTCTGCCTATAATGCTCCTTCCTATGATGCTGCTATTTCACAACCGCTTGCAGATTTGGCATTACCAAGTACTGGCTTAACTGGGCAAGCTCCAGCATCTAGCTTGGCAATTGATGATCTGCTTGGTTTAGGTTTTCCAGTTGGGACTGCAGCCACACCTTCACCTCCTCCATTGAACCTCAACCCAAAAGCAGTATTGGATCCTGGCACATTTCAGCAGAAATGGCGTCAACTGCCAATATCCTTATCAGAGGAATATTCTTTAAGTCCTCAAGGAATTGTGTCGTTGACAGCTCCCAATGCACTCCTCCGACACATGCAAAGTCATTCAATACAGTGCATTGCCTCCGGTCGTCAGTCGCCTAACTTCAAGTTCTTTTTCTTTGCTCAAAAAGCGGACGAAGCATCAGTGTACCTTGTAGAGTGTATAATCAACACATCATCGGGCAAGTCGCAGATTAATATAAAAGCTGATGATCAAAGTTCTTCCCAGGCATTCTCAACTTTATTCCAATCAGCCTTGTCCAAATTTGTTACTATTGACATCATAAGTTTTAAGGTCACAAGGTCACGTAATCTTTCACTTAATTTTGCAAGTTTGATTTTCTTAGCTAACTAA	2592	0.4221	MAPPQSQRSPSPSQPSGKSEVSDLKLQLRQLAGSRAPGTDDLKRDLFKKVISNMTIGIDVSSLFGEMVMCSATSDIVLKKMCYLYVGNYAKGNPELALLTINFLQRDCKDMDPMIRGLALRSLCTLRVENLVEYLVGPLGSGLKDNNSYVRMVAVIGVLKLYHISASTCIDADFPATLKHLMLNDPDTQVVANCLSALQEIWTLESGSSEEAAREREAVHSKPVIYYLLNRIKEFSEWSQCVVLELVAKYVPSDNSEIFDIMNLLEDRLQHANGAVVLATTKVFLHLTLSMADVHQQVYERIKAPLLTQVSSGSPEQSYAILSHLHLLVMRAPYIFSSDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSQDCIAVVGNISSKNVQEPKAKAALIWMLGEYSQDMNDAPYVLESLVENWDEEHSAEVRLHLLTAVMKCFFKRPPETQKALGAALAAGLADFHQDVHDRALFYYRLLQYKVSVAESVVNPPKQAVSVFADTQNSEVKDRIFDEFNSLSVVYQKPSYMFTDKEHRGILEFSDELGNLSISVESGDSVVPAQRVEENDKDLLLSTTEKDEVRDPGSNGSAYNAPSYDAAISQPLADLALPSTGLTGQAPASSLAIDDLLGLGFPVGTAATPSPPPLNLNPKAVLDPGTFQQKWRQLPISLSEEYSLSPQGIVSLTAPNALLRHMQSHSIQCIASGRQSPNFKFFFFAQKADEASVYLVECIINTSSGKSQINIKADDQSSSQAFSTLFQSALSKFVTIDIISFKVTRSRNLSLNFASLIFLAN*	864

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja1g3743	863	Pfam	Beta2-adaptin appendage, C-terminal sub-domain	719	832	IPR015151	GO:0006886\|GO:0016192\|GO:0030131
	Lja1g3743	863	MobiDBLite	consensus disorder prediction	636	654	-	-
	Lja1g3743	863	PANTHER	ADAPTOR COMPLEX SUBUNIT BETA FAMILY MEMBER	15	836	IPR026739	GO:0016192
	Lja1g3743	863	Pfam	Adaptin N terminal region	38	550	IPR002553	GO:0006886\|GO:0016192\|GO:0030117
	Lja1g3743	863	Gene3D	-	707	839	IPR012295	-
	Lja1g3743	863	SUPERFAMILY	ARM repeat	27	597	IPR016024	-
	Lja1g3743	863	SMART	B2_adapt_app_C_2	716	833	IPR015151	GO:0006886\|GO:0016192\|GO:0030131
	Lja1g3743	863	MobiDBLite	consensus disorder prediction	1	22	-	-
	Lja1g3743	863	Gene3D	-	13	608	IPR011989	-
	Lja1g3743	863	MobiDBLite	consensus disorder prediction	636	664	-	-
	Lja1g3743	863	PIRSF	Beta_adaptin	9	838	IPR016342	GO:0015031\|GO:0030276
	Lja1g3743	863	PANTHER	AP-4 COMPLEX SUBUNIT BETA-1	15	836	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja1g3743	Lja-Chr1	46972643	46980307	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja1g3743	-		-	gmx:100801153	1499.95

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lja1g3743	1	46972643	46980307	Lja1g3743	1	46972643	46980307	ECH