Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3739 ATGGCGACGCCGACCACGTTGAACGAAGAAACAACCAAGAAAGTGATACGACAAGTGGAGTTCTACTTCAGTGATAGCAACCTTCCCAAGGACAATTTTATGCGGAAAACCGTCTCTGAAAGCGAAGATGGCATGGTTAGTTTGGCTTTGCTTTGTTCTTTCAACCGAATGCGCCAGCACCTTAATTTGGGTGATGTAAAGGCTGAGGATGTGACTGAAGATACTGTTAAGGCTGTTGCTCATGTTTTGAGAAATTCTGCTTCACTCAAAGTCTCTGAAGATGGGAAAAAAGTTGGCAGGACAACTGAACTTCCAAAGACCGAAGAGGTCATTGAGCAGGTGGATATAAGAACAATTGCTGCATCACCATTTCAATATGATCTGAAGCTTGAAGATGTGGAGACATTCTTCAGTCAATATGCTAAGGTCAACAGTGTGCGTCTTCCCCGTCATGTTGGGGACAAAAAGTTCTTCTGTGGCACTGCCCTGATTGAATTCTCTTCAGAGGAAGAAGTAGAAAAAGTTCTCAAGGAAAAATTGGTCTATGCTGGGGCTGAGTTAGAATTGAAACCAAAGAAGGACTTTGATGCAGAGAGACAAAAGGAGTTAGAAGAATATGAAAAATCTCATCCATCTACTGGTTCAAATCATCAGAATAACTCAGATGCAGATGAATACTACCCAAAAGGCTTAATTATTGCCTTCAAACTAAAGAGCATTTCTGATGAAGTTCCTTCAGAACAAAATGGTGTTGATCAGCAAGCCAATGACAATGCTGTTGTTTCTAAAACTGATGAAAAAATTCCATCTGAAATTACTTCTGAGAAAAATGACGAAAAGGTTTCAGAAAATGTTGACAACGATGAAGAAAATAATGAGATAAAAGATGGAAAGAAAACTCAAGATGAAGAGAAGAATCCCAAAGCTGATGAAAAGCTTTCAGCTGCTGCTTGCAAGGATAACATGGATGTTGTCTTGCGTGAGGATTTGAAGCGTGTGTTTGAGAAGTTTGGTGCAGTGAAGTACATTGATTTCACGATGGGAGCAGACTCAGGATTCATTCGATTTGAAGAAAGTGAAGCGGCTCAAAAATCTCGTGCTGCTGCAGTTCTTTCAGAGAAGGGAGGCTTGGTTGTAAAGAATTATATTGCTATGCTAGATCCAGTGACTGGTGAGGCTGAAAAAGAATACTGGTCCCTGCTTCGTGGTAATCAAGACAAGCGTCGAGATAATTTTAAGGGTAACCGAGGAAGGGGAGGTAGGCATGGTAGAGGGGGAGGGAGACACTCACGCTCAAGAGAAAATGACTCTGCAGCAGGTCGTCCAAATAAAGTTCAGAAAGTTGGTACAGCGGCATAA 1359 0.4157 MATPTTLNEETTKKVIRQVEFYFSDSNLPKDNFMRKTVSESEDGMVSLALLCSFNRMRQHLNLGDVKAEDVTEDTVKAVAHVLRNSASLKVSEDGKKVGRTTELPKTEEVIEQVDIRTIAASPFQYDLKLEDVETFFSQYAKVNSVRLPRHVGDKKFFCGTALIEFSSEEEVEKVLKEKLVYAGAELELKPKKDFDAERQKELEEYEKSHPSTGSNHQNNSDADEYYPKGLIIAFKLKSISDEVPSEQNGVDQQANDNAVVSKTDEKIPSEITSEKNDEKVSENVDNDEENNEIKDGKKTQDEEKNPKADEKLSAAACKDNMDVVLREDLKRVFEKFGAVKYIDFTMGADSGFIRFEESEAAQKSRAAAVLSEKGGLVVKNYIAMLDPVTGEAEKEYWSLLRGNQDKRRDNFKGNRGRGGRHGRGGGRHSRSRENDSAAGRPNKVQKVGTAA* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3739 452 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 117 202 IPR000504 GO:0003723
Lja1g3739 452 CDD RRM2_La_like 323 386 - -
Lja1g3739 452 ProSiteProfiles xRRM domain profile. 304 430 IPR014886 GO:0003723
Lja1g3739 452 MobiDBLite consensus disorder prediction 408 452 - -
Lja1g3739 452 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 125 178 IPR000504 GO:0003723
Lja1g3739 452 SUPERFAMILY RNA-binding domain, RBD 327 413 IPR035979 GO:0003676
Lja1g3739 452 ProSiteProfiles La-type HTH domain profile. 5 108 IPR006630 -
Lja1g3739 452 MobiDBLite consensus disorder prediction 245 263 - -
Lja1g3739 452 Gene3D - 3 105 IPR036388 -
Lja1g3739 452 Gene3D - 315 416 IPR012677 -
Lja1g3739 452 SMART la 9 101 IPR006630 -
Lja1g3739 452 PANTHER BNAANNG34180D PROTEIN 5 448 - -
Lja1g3739 452 PANTHER LUPUS LA PROTEIN-RELATED 5 448 IPR045180 -
Lja1g3739 452 MobiDBLite consensus disorder prediction 245 314 - -
Lja1g3739 452 Pfam RNA binding motif 325 416 IPR014886 GO:0003723
Lja1g3739 452 Gene3D - 110 208 IPR012677 -
Lja1g3739 452 MobiDBLite consensus disorder prediction 200 224 - -
Lja1g3739 452 CDD LA_like_plant 11 100 - -
Lja1g3739 452 SMART rrm1_1 118 190 IPR000504 GO:0003723
Lja1g3739 452 SMART rrm1_1 321 380 IPR000504 GO:0003723
Lja1g3739 452 MobiDBLite consensus disorder prediction 268 314 - -
Lja1g3739 452 SUPERFAMILY "Winged helix" DNA-binding domain 4 106 IPR036390 -
Lja1g3739 452 PRINTS Lupus La protein signature 44 59 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Lja1g3739 452 PRINTS Lupus La protein signature 18 35 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Lja1g3739 452 PRINTS Lupus La protein signature 158 176 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Lja1g3739 452 Pfam La domain 15 84 IPR006630 -
Lja1g3739 452 SUPERFAMILY RNA-binding domain, RBD 109 194 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3739 Lja-Chr1 46888151 46891974 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3739 K11090 - gmx:100786016 592.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3739 1 46888151 46891974 Lja1g3739 1 46888151 46891974 ECH