LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja1g3737	ATGCGCCCACCGGTTCTTCTCGAAACTACCTCTTTTTCTTCTTCTTCTTCTTCCCCAAGCGATCGCAGACTCAACGTTCTCGCAGGCCACCTCGTTCACAACGATCAAATGGATTCTCAGAACATCTCTCCTTCTCCAACCGCCTCTTCTGGTTCCGTCTTCGCTCATCTCGTTCGTGCTCCCGAAGATCCTATTCTCGGGGTGACTGTCGCTTTCAACAAAGATCCTAGCCCTGTTAAGCTCAACTTGGGTGTTGGTGCTTACCGAACTGAGGAAGGAAAACCTCTTGTTTTGAATGTGGTCAGGAAAGCTCAACACCAAATCGTGAATGATCCGTCACGCAACAAGGAGTATCTTCCAATTGTGGGGCTCGCTGATTTTAATAAATTGAGTGCCAAGCTTATTTTTGGTGCTGACAGCCCTGCTATTCAAGAGAACAGGATTACCACTGTTCAGTGCTTGTCTGGTACTGGTTCATTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAACGGATTATATACTTGCCAAAACCAACTTGGGGCAATCACACAAAGGTTTTCACCTTGGCAGGGTTATCTGTCAAAACATATCGCTACTATGCTCCAGCAACACGAGGGCTTGACTTTCAAGGACTTCTAGAAGATCTTGGTTCTGCCCCATCTGGATCCATTGTTTTGCTACATGCATGCGCTCATAACCCTACTGGTGTTGATCCAACCCCTGAGCAATGGGAGCAGATTAGGCAGCTGATAAGATCAAAGGCTTTATTACCTTTCTTTGACAGTGCTTATCAGGGTTTTGCTAGTGGAAATCTAGATGCAGATGCACATTCTGTTCGTTCATTTGTTGCTGATGGGGGTGAATTGCTGGCAGCCCAGAGTTATGCAAAGAACATGGGTCTTTATGGAGAACGTGTTGGTGCCTTAAGCATTGTCTCCAAGTCAGCTGATGTTGCAAGTTTGGTTGAGAGTCAGCTGAAGCTTGTCATCAGGCCCATGTACTCAAATCCTCCCCTTCATGGTGCATCCATTGTAGCTACGATTCTTAAGGACCGGGATTTGTACAATGAGTGGACTATTGAGTTGAAGGGAATGGCTGATCGTATTATCAGTATGCGCCAACAACTTTTTGATGCTTTACGTTCCAGAGGCACGCCTGGTGACTGGAGTCACATTATCAAGAGTATCGGTATGTTCACTTTCACAGGATTGAATCCTGAGCAGGTTTCCTTCATGACTAAAGAGTACCATATATACCTGACATCCGATGGGCGGATTAGCATGGCTGGTTTGAGTTCCAAAACCGTCCCACATCTGGCGGATGCTATACATGCGGCTGTAACCCGAGCTTCCTGA	1365	0.463	MRPPVLLETTSFSSSSSSPSDRRLNVLAGHLVHNDQMDSQNISPSPTASSGSVFAHLVRAPEDPILGVTVAFNKDPSPVKLNLGVGAYRTEEGKPLVLNVVRKAQHQIVNDPSRNKEYLPIVGLADFNKLSAKLIFGADSPAIQENRITTVQCLSGTGSLRVGGEFLAKHYHQRIIYLPKPTWGNHTKVFTLAGLSVKTYRYYAPATRGLDFQGLLEDLGSAPSGSIVLLHACAHNPTGVDPTPEQWEQIRQLIRSKALLPFFDSAYQGFASGNLDADAHSVRSFVADGGELLAAQSYAKNMGLYGERVGALSIVSKSADVASLVESQLKLVIRPMYSNPPLHGASIVATILKDRDLYNEWTIELKGMADRIISMRQQLFDALRSRGTPGDWSHIIKSIGMFTFTGLNPEQVSFMTKEYHIYLTSDGRISMAGLSSKTVPHLADAIHAAVTRAS*	455

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja1g3737	454	Gene3D	-	113	354	IPR015421	GO:0003824
	Lja1g3737	454	CDD	AAT_like	81	434	-	-
	Lja1g3737	454	SUPERFAMILY	PLP-dependent transferases	52	452	IPR015424	-
	Lja1g3737	454	MobiDBLite	consensus disorder prediction	7	21	-	-
	Lja1g3737	454	PANTHER	ASPARTATE AMINOTRANSFERASE	52	453	IPR000796	GO:0006520\|GO:0008483
	Lja1g3737	454	MobiDBLite	consensus disorder prediction	1	21	-	-
	Lja1g3737	454	Gene3D	Aspartate Aminotransferase, domain 1	59	446	IPR015422	GO:0003824
	Lja1g3737	454	Pfam	Aminotransferase class I and II	80	446	IPR004839	GO:0009058\|GO:0030170
	Lja1g3737	454	PRINTS	Aspartate aminotransferase signature	228	247	IPR000796	GO:0006520\|GO:0008483
	Lja1g3737	454	PRINTS	Aspartate aminotransferase signature	259	271	IPR000796	GO:0006520\|GO:0008483
	Lja1g3737	454	PRINTS	Aspartate aminotransferase signature	327	352	IPR000796	GO:0006520\|GO:0008483
	Lja1g3737	454	PRINTS	Aspartate aminotransferase signature	395	413	IPR000796	GO:0006520\|GO:0008483
	Lja1g3737	454	ProSitePatterns	Aminotransferases class-I pyridoxal-phosphate attachment site.	297	310	IPR004838	GO:0003824\|GO:0009058\|GO:0030170
	Lja1g3737	454	PANTHER	ASPARTATE AMINOTRANSFERASE	52	453	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja1g3737	Lja-Chr1	46874005	46878793	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja1g3737	K14454		-	gmx:547509	762.296

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lja1g3737	1	46874005	46878793	Lja1g3737	1	46874005	46878793	ECH