Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3731 ATGGTGAATCCCTTGGTGGAGCGTGCCACAAGCGACATGCTCATCGGTCCTGACTGGGCTTTGAACATCGAGATCTGTGATATACTCAATCGTGACCCTGCGCAATCAAAGGATGTTGTTAAAGGCTTAAAGAAGCGGATTGGAAGTAGAAGTTCTAAAGTTCAACTTCTTGCACTAACTCTTCTTGAGACAATCATAAAGAATTGTGGGGACATTGTCCACATGCATGTTGCAGAGAGAGATGTTCTTCATGAGATGGTGAAAATAGTAAAGAAGAAGCCTGATCCCCGTGTCAGAGAGAAGATAATGATTCTCATAGATACTTGGCAAGAAGCTTTTGGAGGGCCAAGAGCAAGATATCCACAATATTATGCTGCGTACCAGGAACTACTGCATTCTGGGGCAGTATTCCCTCAGAGATCCGAGCAATCTGCACCTGTATTCACACCACTCCAAACACAACCATTAACATCATACCCTCAAAATATACGAGACTCTGATGCTCAGCCACACACAGCCGAGTCCTCGGCAGAGTCTGAGTTTCCAACGCTAAGTTTGTCTGAAATTCAGAACGCACGTGGTATTATGGATGTTCTTGCAGAAATGCTCAGTGCTATTGAGCCTGGTAACAAAGAAGGGCTTCGGCAGGAGGTTATTGTTGATTTAGTGGAGCAATGTCGAACATACAAGCAGAGAGTGGTGCACCTCGTTAATTCAACATCGGATGAGTCGCTGCTATGCCAAGGACTAGCTCTGAATGATGATCTGCAGCGTGTACTGGCAAAACATGAATCCATTGCTTCAGGAACTCCTGGTCAAAATCATACTGAGAAACTGAATCCTGCACCTCCTGGAGCTCTTATAGATGTTGGTGGTCCCTTGGTTGATACTGGAGATACTAGTAAACAATCTGATGAGAGGTCTCCTTCTGGTGCTGAAGGAGGGTCTCAAACATTGAATCAGTTATTGCTTCCTGCACCTCCTACATCAAATGGTTCAGCTCCCCCCATTAAGATTGATCCCAAATTGGACCTGCTCAGTGGTGACGACTATAACTCACCAAAAGCAGACAATTCACTTGCTCTCGTTCCTGTTGGACAACAACAGCCTGCAAGTCCTATGTCTCAGCAGAATGCCCTGGTTCTTTTTGATATGTTTTCAAATGGAAGCAATGCGCCTTCTGTCAATAACCAGCCAACTAATGTTGCTGTGCCGAACAGTCCATTAAGCCCCCAATTTCAACAGCAGCAAACTTTCATTTCTCAAGGTGTATACTACCCCAATGGAAGTATGCCAAGTGTGGGGTCACCTCAGTATGAGCAATCACGATATGCACAAAGCACTGGTCCTGCCTGGAATGGCCAGGCTGCACAGCAGCAACAGCCACCTTCACCAGTCAATGGTGCACAAAGTGGTGGGTCATTCCCACCACCACCCTGGGAAGCTCAAGCCGCAGAAAACGGTAGTCCGGTTGCCGGCAATCAATACCCACAACCACTGCAGGTCACTCAAATGGTTGTGACACATGTACAAGGTGCTCCCCTTCCTCAGGGACCTCAAGCAATGGGGTATGACCAGGCTGTTGGAATGTACATGCAGCAACCAAATGCTAGCCATATGTCAGCAATGAATAACCAAGTTCAAAGTAATCAATTTGGCATGCACCCTCAGTATGCTCAGGGTGTAGCAGCTTCTCCCTATATGGGTATGGTTCCACATCAAATGCAGAATGGTCCTGTGGCTCATCCCATGTATGCTCAACAGATGTATGGCAACCAATACATGGGAGGATATGGCTATGGTCAACAACCACAACAAGGGGTTCAATATGTTGAGCAGCAAATGCATGGTTTATCTATGAGTGATGATAGAAATTCCTCATATGTGCCACCGAAGAAGCCTTCCAAGCCAGAGGATAAGTTATTTGGAGACCTTGTTGACATGGCAAAAGTGAAACCAAAACCTACTCCCCCGTAG 1977 0.4623 MVNPLVERATSDMLIGPDWALNIEICDILNRDPAQSKDVVKGLKKRIGSRSSKVQLLALTLLETIIKNCGDIVHMHVAERDVLHEMVKIVKKKPDPRVREKIMILIDTWQEAFGGPRARYPQYYAAYQELLHSGAVFPQRSEQSAPVFTPLQTQPLTSYPQNIRDSDAQPHTAESSAESEFPTLSLSEIQNARGIMDVLAEMLSAIEPGNKEGLRQEVIVDLVEQCRTYKQRVVHLVNSTSDESLLCQGLALNDDLQRVLAKHESIASGTPGQNHTEKLNPAPPGALIDVGGPLVDTGDTSKQSDERSPSGAEGGSQTLNQLLLPAPPTSNGSAPPIKIDPKLDLLSGDDYNSPKADNSLALVPVGQQQPASPMSQQNALVLFDMFSNGSNAPSVNNQPTNVAVPNSPLSPQFQQQQTFISQGVYYPNGSMPSVGSPQYEQSRYAQSTGPAWNGQAAQQQQPPSPVNGAQSGGSFPPPPWEAQAAENGSPVAGNQYPQPLQVTQMVVTHVQGAPLPQGPQAMGYDQAVGMYMQQPNASHMSAMNNQVQSNQFGMHPQYAQGVAASPYMGMVPHQMQNGPVAHPMYAQQMYGNQYMGGYGYGQQPQQGVQYVEQQMHGLSMSDDRNSSYVPPKKPSKPEDKLFGDLVDMAKVKPKPTPP* 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3731 658 PANTHER TOM1-LIKE PROTEIN 1 656 IPR044836 GO:0035091|GO:0043130|GO:0043328
Lja1g3731 658 SUPERFAMILY GAT-like domain 141 269 - -
Lja1g3731 658 ProSiteProfiles GAT domain profile. 180 268 IPR004152 GO:0035091|GO:0043130
Lja1g3731 658 MobiDBLite consensus disorder prediction 265 340 - -
Lja1g3731 658 Pfam VHS domain 4 123 IPR002014 GO:0035091|GO:0043130
Lja1g3731 658 Pfam GAT domain 194 268 IPR004152 GO:0035091|GO:0043130
Lja1g3731 658 SUPERFAMILY ENTH/VHS domain 3 138 IPR008942 -
Lja1g3731 658 SMART VHS_2 2 134 IPR002014 GO:0035091|GO:0043130
Lja1g3731 658 CDD GAT_GGA_like_plant 188 266 - -
Lja1g3731 658 ProSiteProfiles VHS domain profile. 9 138 IPR002014 GO:0035091|GO:0043130
Lja1g3731 658 MobiDBLite consensus disorder prediction 633 647 - -
Lja1g3731 658 MobiDBLite consensus disorder prediction 431 471 - -
Lja1g3731 658 CDD VHS 2 130 - -
Lja1g3731 658 MobiDBLite consensus disorder prediction 160 182 - -
Lja1g3731 658 Gene3D - 1 148 IPR008942 -
Lja1g3731 658 MobiDBLite consensus disorder prediction 304 328 - -
Lja1g3731 658 PANTHER TARGET OF MYB PROTEIN 1 1 656 - -
Lja1g3731 658 Gene3D - 183 275 IPR038425 -
Lja1g3731 658 MobiDBLite consensus disorder prediction 616 658 - -
Lja1g3731 658 MobiDBLite consensus disorder prediction 431 496 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3731 Lja-Chr1 46708779 46714964 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3731 - - gmx:100805762 967.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3731 1 46708779 46714964 Lja1g3731 1 46708779 46714964 ECH