Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3730 ATGCAGGCGTCGCGGGCGAGGTTGTTCAAGGAGTACAAGGAGGTGCAGCGAGAGAAGACGGCTGATCCTGATATTCAATTAGTTTGTGATGATTCCAACATTTTTAAATGGACGGCTCTTATCAAGGGACCATCAGAGACTCCTTTTGAGGGTGGTGTGTTCCAGCTTGCTTTTTCTGTTCCAGAGCAGTATCCTCTACAACCACCTCAAGTGCGGTTTTTGACTAAGATATTTCATCCAAATGTGCATTTTAAGACAGGGGAGATTTGCCTAGATATCTTGAAAAATGCTTGGAGCCCAGCTTGGACGCTTCAGTCTGTGTGCAGGGCTATAATTGCTTTGATGGCCCATCCAGAACCTGACAGCCCACTGAATTGTGATTCAGGCAATCTTCTACGTTCAGGTGATGTTAGAGGGTACCAGTCCATGGCAAGAATGTACACTAGGCTTGCAGCAATGCCAAAGAAAGGCTGA 474 0.4641 MQASRARLFKEYKEVQREKTADPDIQLVCDDSNIFKWTALIKGPSETPFEGGVFQLAFSVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGYQSMARMYTRLAAMPKKG* 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3730 157 Gene3D Ubiquitin Conjugating Enzyme 1 152 IPR016135 -
Lja1g3730 157 SMART ubc_7 6 153 - -
Lja1g3730 157 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 2 157 - -
Lja1g3730 157 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 78 94 IPR023313 -
Lja1g3730 157 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 3 153 IPR000608 -
Lja1g3730 157 CDD UBCc 7 148 IPR000608 -
Lja1g3730 157 Pfam Ubiquitin-conjugating enzyme 7 147 IPR000608 -
Lja1g3730 157 SUPERFAMILY UBC-like 4 153 IPR016135 -
Lja1g3730 157 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 2 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3730 Lja-Chr1 46703193 46705986 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3730 7 123 Miscellaneous Gene Families AT3G17000 36.585 7.21e-17 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3730 K10689 - ini:109190965 325.094
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3730 1 46703193 46705986 Lja1g3730 1 46703193 46705986 ECH