Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3715 ATGGATTCCTATGGCAATCGATCCCTCCATAGCTTGATGGACACAGAAACCATGACAGAACAACAATCCCCCAACATTCACCTTCGTGTCCAAACCCACATAGAAACAAGTGATCAAGATCTTCAGTTCACTTCACCAAGGCCTTCCACTTCTGATGGTACAACAATGTTTCCTATGGTGTCACCAACGATGTCACCAACCCCTTGTCCTGAATCACCATGGACTCTTTCCCCTCTCCAATCACCTTCCCCTTCATTGCTTTACCAATGCATCGCCTCCCTCCACCGCCACGAAGGTAACATCTACGCCATCTCCACTTCCAAGGGCTTAATCTTCACAGGCTCCAACAGCAGCAGGATTCGTGTTTGGAAGCAGCCAGATTGCATGGACAGAGGGCACCTCAGAGCAAGCTATGGCGATGTCAGAGCCATTCTGGCTTACAGCAACATGCTTTTCTCCACACACAAGGACTACAAAATCAGAATATGGAACTTCGCAGTCTCAGAAACCTTCAAATCCAAGAAAGTCGGCACCCTCCCTAGAAAAACCTCTCTTCTTTCATTTCACAAATCAAAACACACACAGAAACACAGAGATTCTGTTACCTGTTTGGCTTATTACCACTCAGAAGGGCTATTATACTCTGGCTCTCATGACAGAACAGTGAAAGCTTGGAGAGTCTCTGATACAAAATGTGTTGATTCCTTCGTAGCACATGATGATAACATCAACTCAATCTTGGTGAACCAAGATGATGGTTGTCTTTTCACTTGTTCCTCTGATGGATCAGTGAAAATTTGGAGAAGGTTATACACAGAAGACTCTCACACTCTCACAATGACCTTAAAGTTCCAACCTTCCCCTGTTAATGCTCTGGCTCTGAGCTCCTCATTCAACCACTGCTTCCTCTATTCAGGATCTTCTGATGGGATGATAAATTTCTGGGAAAAGGAGAGATTGTGCTACAGATTCAACCATGGAGGGTTCTTGCAGGGTCACCATTTTGCGGTTCTTTGCTTAGCAGCCGTTGGGAACATGGTTTTCAGTGGGTCAGAAGACACTACAATAAGGGTGTGGAGAAGAGAAGAAGGGAGTTGCTACCATGAGTGTTTGAATGTTTTGGAGGGCCATAGAGGGCCTGTGAAGTGCTTGTGTGCTTGTCTTGAGATGGAGAAAGTGGTGATGGGGTTCTTGGTGTATAGTACTAGTTTGGATCAAACTTTTAAGGTGTGGAGGATTAAGGTTCTGGCAGAGGAAAAGGTGGGTTTTGAAGAGTGTCATGGTGATCAAGGTGGAGGTAGAGTGAAGGATAGAGAGTACGATATGAGCCCGGTTTTGTCCCCTTCATGGGTGGAGAAGAAGCTTCAAGGTAGCCACTTTCAGTGA 1386 0.456 MDSYGNRSLHSLMDTETMTEQQSPNIHLRVQTHIETSDQDLQFTSPRPSTSDGTTMFPMVSPTMSPTPCPESPWTLSPLQSPSPSLLYQCIASLHRHEGNIYAISTSKGLIFTGSNSSRIRVWKQPDCMDRGHLRASYGDVRAILAYSNMLFSTHKDYKIRIWNFAVSETFKSKKVGTLPRKTSLLSFHKSKHTQKHRDSVTCLAYYHSEGLLYSGSHDRTVKAWRVSDTKCVDSFVAHDDNINSILVNQDDGCLFTCSSDGSVKIWRRLYTEDSHTLTMTLKFQPSPVNALALSSSFNHCFLYSGSSDGMINFWEKERLCYRFNHGGFLQGHHFAVLCLAAVGNMVFSGSEDTTIRVWRREEGSCYHECLNVLEGHRGPVKCLCACLEMEKVVMGFLVYSTSLDQTFKVWRIKVLAEEKVGFEECHGDQGGGRVKDREYDMSPVLSPSWVEKKLQGSHFQ* 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3715 461 Pfam WD domain, G-beta repeat 369 411 IPR001680 GO:0005515
Lja1g3715 461 Pfam WD domain, G-beta repeat 231 267 IPR001680 GO:0005515
Lja1g3715 461 Pfam WD domain, G-beta repeat 193 225 IPR001680 GO:0005515
Lja1g3715 461 Pfam WD domain, G-beta repeat 329 359 IPR001680 GO:0005515
Lja1g3715 461 Pfam WD domain, G-beta repeat 280 315 IPR001680 GO:0005515
Lja1g3715 461 ProSiteProfiles Trp-Asp (WD) repeats profile. 236 267 IPR001680 GO:0005515
Lja1g3715 461 PANTHER OS01G0232200 PROTEIN 1 454 - -
Lja1g3715 461 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 1 454 IPR045182 -
Lja1g3715 461 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 236 267 - -
Lja1g3715 461 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 194 228 - -
Lja1g3715 461 ProSiteProfiles Trp-Asp (WD) repeats profile. 194 235 IPR001680 GO:0005515
Lja1g3715 461 CDD WD40 90 412 - -
Lja1g3715 461 MobiDBLite consensus disorder prediction 1 22 - -
Lja1g3715 461 SMART WD40_4 275 316 IPR001680 GO:0005515
Lja1g3715 461 SMART WD40_4 127 164 IPR001680 GO:0005515
Lja1g3715 461 SMART WD40_4 229 268 IPR001680 GO:0005515
Lja1g3715 461 SMART WD40_4 323 360 IPR001680 GO:0005515
Lja1g3715 461 SMART WD40_4 188 226 IPR001680 GO:0005515
Lja1g3715 461 SMART WD40_4 87 124 IPR001680 GO:0005515
Lja1g3715 461 SMART WD40_4 367 412 IPR001680 GO:0005515
Lja1g3715 461 Gene3D - 184 422 IPR015943 GO:0005515
Lja1g3715 461 SUPERFAMILY WD40 repeat-like 89 414 IPR036322 GO:0005515
Lja1g3715 461 Gene3D - 74 183 IPR015943 GO:0005515
Lja1g3715 461 ProSiteProfiles Trp-Asp (WD) repeats profile. 330 369 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3715 Lja-Chr1 46491656 46493318 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3715 197 428 Miscellaneous Gene Families AT5G08390 23.849 3.62e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3715 - - adu:107470716 706.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3715 1 46491656 46493318 Lja1g3715 1 46491656 46493318 ECH