Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3711 ATGGCCATTTCACATAATAATACATTTCTGGTGCATTGCTCCATTCATAAAAACCCCTTGATTGTCTCAGACAGTAATTCTCGTCACTACAACATCCCACTTTTCTCTGCTTTCAAGTTGAGATTTGGAAAAGCAAACAAATACCTTAGCAATACCAGTGTGTTTGAGCATTCGGGGAAGTTTTACTCGGCTGCCGAAATTCACATCCCACAAGAGATTGACATCTTTACCTTGAAAACTTTAAACAACTGGGATGTCAATGGAGCCTGGGACCGACCTTTTACAAGTCATCCAAAGAAAGCTCCAGGTACAGGGGAACTTGTTACATTAGGGGTGGCACCTGCTAAACCTTTTGTTGTTGTCGGAATTTTCTCCGCTGATGGAAACAAATTAATTCATAAAGTTGATCTCAAACTCAACAGGTACAATGTGATCATAGATTTTCCACCAACCATTGATCTTAACAGACTTCTTAGAGGAGGCCCTCTACATGTAGATTAG 501 0.4032 MAISHNNTFLVHCSIHKNPLIVSDSNSRHYNIPLFSAFKLRFGKANKYLSNTSVFEHSGKFYSAAEIHIPQEIDIFTLKTLNNWDVNGAWDRPFTSHPKKAPGTGELVTLGVAPAKPFVVVGIFSADGNKLIHKVDLKLNRYNVIIDFPPTIDLNRLLRGGPLHVD* 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3711 166 Pfam Retinal pigment epithelial membrane protein 40 141 IPR004294 GO:0016702
Lja1g3711 166 PANTHER BETA-CAROTENE DIOXYGENASE 39 163 IPR004294 GO:0016702
Lja1g3711 166 PANTHER OS06G0162550 PROTEIN 39 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3711 Lja-Chr1 46459729 46464026 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3711 - - lja:Lj0g3v0073129.3 256.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3711 1 46459729 46464026 Lja1g3711 1 46459729 46464026 ECH