Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3709 ATGGCCATTTCATATAATAATGCATTTATGGTAAATTGCTCCATTCACAAAAGACCCTTGCATGTCTCAGACAATAACTCTGCTTTCAAGCCAATGATCATGAGAGCTGTGTCTCAAGTCCCCTTGCAAATCAATGATGTTATGAAAAGCACTGCGGTTAAATTAGTTGATGCTTTTGTGGATTCATTCTTTGAATTCATTGACAAGCCATTGCTTGTTCCATCTCAGAGTAACTTTGCTCCGGTGGAGGAGTTGGAGGAAGCCATACTTATAACCACCATTCAAGGACAAATACCAGATGGTTTCCCACAGGGTGTTTACATCAGAAATGGATCAAATCCTCTCTTTGGAGGCCTGAAATCAACAAATTCTATCTTTGGGAGGTCAAGTCACATTTGGGTGGAAGGGGAGGGAATGCTTCATGCCTTGTATTTTAAAAACTCAAGTCATGGGGATTGGACTGTCATCTACAACAACAAGCATGTTGAGACCGAAACTTACAACCTTGAAAAACAAAGGAACAAACCATTGTTTCTACCGGCCGTAAAAGGCGATTCGCTAGTCATTTTGTTTTCTTATCTGCTAAACTGGATGCGATTTGGAGAAGTAAACAAATACATGAGCAACACCAATGTCTTTGAGCATTCAGGGAAGTTTTACTCAGTTGCTGAAAGTCACATTCCACAAGAGATTGATATCTTTACCCTTAAAACTTCAAACAACTGGGATATCAATGGAGCGTGGAACCGACCTTTTAGCAGTCATCCAAAGAAAGTTCTAGGTACAGGGGAACTAGTTACATTAGGGGTGTCACCAACTAAACCTTTTGCTGTAGTTGGAATTGTTTCGGCTGATGGAAAAAAATTAATTCATGAAGTTGATCTTAAACTAAACAGATGCGTTCTTGGACATGACATAGGTGTTACACAAAGGTACATTGTGATCATGGATTTTCCACTCACCATTGATCTAAACAGAGTTCTCAGGGGAGGCCCATTAATAAAGTATGAAAAAGATGATTATGCAAGGATTGGGATAATGCCACACTATGGTAATGCCAACTCAATCAAATGGTTTGAGGTGGAACCTTATTGCACCTTTCACATTATCAATTCTTTTGAGGATGGTGACGAGGTTGTAGTGAGGGGCTGCAAAGCTCTTGATTCAGTAATTCCTGGACCTAACCCGAATTCGAATGAACTTGATTGGTTTTCCCGTTGTTATGAATGGAGATTGAATATGCAAACTGGGGAGATAAAGGAGAAATATCTCTGTAAATCAAATATAGTGTATATGGATTTTCCTATGATCAATGAAAACTTCATAGGTGTTAAGAATAGATATGCATACACACAAGTAGTTGATCCTGCTGCAAGCACTACTCAAGTCGGGCCAAAATATGGAGGTTTAGCAAAGCTCTACTTTGAAGAATCATGTGAAGAGTTCTCTATGATAGACAAAGAGAAACCTGAAGAACCAATAAAGGTGGAATACCACATGTTTGAGAAGAATGTATTTTGTACTGGAGCATCATTTGTGCCAAAAAATGAGGGTGTTGAAGAAGATGATGGTTGGGTCATCACTTTTGTTCACAATGAAGATACTAACACATCTCAATTTCATATAATTGACACAAAGAAGTTTTCTGGTGAGACAGTTGTCAAAATCACTTTTCCTCACAGAGTTCCATATGGGTTTCATGGAGCTTTCATGCCAATCTCATTCCAGGATCAGTAG 1737 0.3892 MAISYNNAFMVNCSIHKRPLHVSDNNSAFKPMIMRAVSQVPLQINDVMKSTAVKLVDAFVDSFFEFIDKPLLVPSQSNFAPVEELEEAILITTIQGQIPDGFPQGVYIRNGSNPLFGGLKSTNSIFGRSSHIWVEGEGMLHALYFKNSSHGDWTVIYNNKHVETETYNLEKQRNKPLFLPAVKGDSLVILFSYLLNWMRFGEVNKYMSNTNVFEHSGKFYSVAESHIPQEIDIFTLKTSNNWDINGAWNRPFSSHPKKVLGTGELVTLGVSPTKPFAVVGIVSADGKKLIHEVDLKLNRCVLGHDIGVTQRYIVIMDFPLTIDLNRVLRGGPLIKYEKDDYARIGIMPHYGNANSIKWFEVEPYCTFHIINSFEDGDEVVVRGCKALDSVIPGPNPNSNELDWFSRCYEWRLNMQTGEIKEKYLCKSNIVYMDFPMINENFIGVKNRYAYTQVVDPAASTTQVGPKYGGLAKLYFEESCEEFSMIDKEKPEEPIKVEYHMFEKNVFCTGASFVPKNEGVEEDDGWVITFVHNEDTNTSQFHIIDTKKFSGETVVKITFPHRVPYGFHGAFMPISFQDQ* 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3709 578 PANTHER BETA-CAROTENE DIOXYGENASE 25 573 IPR004294 GO:0016702
Lja1g3709 578 Pfam Retinal pigment epithelial membrane protein 80 572 IPR004294 GO:0016702
Lja1g3709 578 PANTHER OS06G0162550 PROTEIN 25 573 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3709 Lja-Chr1 46440523 46444468 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3709 - - gmx:100817738 931.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3709 1 46440523 46444468 Lja1g3709 1 46440523 46444468 ECH