Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3702 ATGGCTTTCATAGCATCATCACCTATCATGAACTCCATTTCGTGGCCAACTATGGTTGTTTCTGACATGTCTCATATTGTCAAGGACGGGTTTTCATTTCGAAACAACAATAAGGGCATGCATAAAGGCCAACACCATCTTCAAGGCTTGACCGTTGCAAATGTTGCAAGTCCATCAGTGCCCGTGATTGCTCCACAAAGGGAGGAGCCGTCAGGGACCTCCGATGACGGCCACAGTCAGCACCACCATGTTGCATGGACTAGTATACCCCGAGAGAGATGGGAAGGAGAGTTGGCTGTTCAAGGACAAATACCATTCTGGCTGAAAGGAACGTATATAAGGAATGGCCCGGGCATGTGGCACATAGGGGACTACAACTTCAGGCACCTCTTTGACGGCTACGCCACTCTGGTCAAGCTTAACTTCGAGAATGGCCGGTTAATCGCCGGCCACAGGCAAATCGAGTCTCAAGCCTACGAAGCCGCGAAGAAAAACCAGAAGATATGTTACCGTGAATTCTCTGAGGTGCCTAAAGCAGAAAGCTTCTTAGCCTACGTGGGGGAGCTCGCAAGCTTGTTCTCTGGCGCATCTCTCACTGATAACGCCAACACTGGCGTTGTCAAGCTCGGCGACGGGAGGGTGGTGTGTCTCACGGAGACCCAGAAAGGGTCCATTGTGATAGACCCTGACACACTGGACACGCTTAGGAAATTCGAGTACAGTGACTCTCTAGGGGGTCTAATTCACTCTGCACATCCCATTGTGACAGACAATGAGTTTTTAACGTTGCTTCCAGATCTTGTTAGACCAGGGTACCTAGTGGTGAGAATGGAGCCTGGTACTAATGAGAGGAAGGTGATCGGTCGGGTCGACTGTCGCGGCGGGCCATCACCCGGTTGGGTCCATTCTTTCCCTGCTACTGACCACTATGTTATTGTGCCTGAAATGCCTCTTAGATACTGTGCTCAGAATTTACTAAAGGCTGAGCCTACTCCACTGTACAAGTTCCAGTGGCACCCTGAATCCAAAGCTTTTATGCATGTCATGTGCAAGACTAGTGGAAAGATTGTGGCAAGTGTGGAAGTGCCTCTGTTCATCACTTTCCATTTCATAAATGCGTACGAAGAGGAAGATGAAGATGGGAGGGTGACGGCAGTTATTGCTGACTGTTGTGAGCACAATTCAAATACTGACATTCTTGAAAGGCTTAGATTACAGAATCTTCGCTCATTCAATGGCCAAGATGTTCTGCCAGATGCTAAGGTTGGTCGGTTCAGAATACCTCTGGATGGGAGTCCAAATGGAACACTGGAACCAGCATTAGACCCAAATGAACATGGGAAAGGCATGGACATGTGCAGCATAAACCCTAACTATTTAGGGAAGAAATACAGATATGCCTATGCTTGTGGAGCAAACCGACCTTGTAACTTTCCCAACACCCTCACCAAGCTTGATTTAGAGTTGAAAAAGGCTAAGACCTGGTATGATGAAGGTGCTGTGCCATCTGAACCATTCTTTGTGGCTCGACCAGGAGCAACAGAGGAAGATGATGGCGTGGTAATCTCTATAATCAGTGGGAAAAATGGAGAAGGATATGCTTTGTTGTTAGATGGCTCCACCTTTGAAGAGATTGCTAGAGCTGAGTTCCCTCATGGTATTCCATATGGATTGCATGGATGCTGGGTTCCAAAAAAGTAG 1701 0.4785 MAFIASSPIMNSISWPTMVVSDMSHIVKDGFSFRNNNKGMHKGQHHLQGLTVANVASPSVPVIAPQREEPSGTSDDGHSQHHHVAWTSIPRERWEGELAVQGQIPFWLKGTYIRNGPGMWHIGDYNFRHLFDGYATLVKLNFENGRLIAGHRQIESQAYEAAKKNQKICYREFSEVPKAESFLAYVGELASLFSGASLTDNANTGVVKLGDGRVVCLTETQKGSIVIDPDTLDTLRKFEYSDSLGGLIHSAHPIVTDNEFLTLLPDLVRPGYLVVRMEPGTNERKVIGRVDCRGGPSPGWVHSFPATDHYVIVPEMPLRYCAQNLLKAEPTPLYKFQWHPESKAFMHVMCKTSGKIVASVEVPLFITFHFINAYEEEDEDGRVTAVIADCCEHNSNTDILERLRLQNLRSFNGQDVLPDAKVGRFRIPLDGSPNGTLEPALDPNEHGKGMDMCSINPNYLGKKYRYAYACGANRPCNFPNTLTKLDLELKKAKTWYDEGAVPSEPFFVARPGATEEDDGVVISIISGKNGEGYALLLDGSTFEEIARAEFPHGIPYGLHGCWVPKK* 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3702 566 PANTHER BETA-CAROTENE DIOXYGENASE 79 565 IPR004294 GO:0016702
Lja1g3702 566 PANTHER CAROTENOID CLEAVAGE DIOXYGENASE-RELATED 79 565 - -
Lja1g3702 566 MobiDBLite consensus disorder prediction 64 83 - -
Lja1g3702 566 Pfam Retinal pigment epithelial membrane protein 95 564 IPR004294 GO:0016702
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3702 Lja-Chr1 46307928 46312091 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3702 K17913 - gmx:100814148 991.875
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3702 1 46307928 46312091 Lja1g3702 1 46307928 46312091 ECH