Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3698 ATGGATGGTCAACTTGGTAACAATGGAGAGGACTCAAATGAAGAAAAATACACGGAGGGAGATTATTCTTTAGTACCCTGCTTACTTAACAAGTTTATTGGGTTGCACCCCTCTGATTCTTCAACAAGTGTGTCTGAAGGTGAAGGCAAAGAATCATTAAGGATCTGTGCTGTCAAAGCAGGAGGAATGATGTCTCTGGCTATTGATAATCGCGGGACCCTGTGGATGTGGGGAAACTGCCCACAAGAAAGCAAAGAAGGCGCGTTATCTTTTGAAACCAGTTTCATTCCAGCACCAGTATGGGACTTTCATGGTCGCGTTGTTGTCAAGGTTTCATGTGGAAATGAGCATGTTGTAGCTCTGGTTAGTGCTACAGAGTCATACAATGGTGAAGATCTAGTGTGCTACTCTTGGGGTCATAACAACCACGGCCAATTAGGTGTCGGGGATAGGGAGAGCAGGCTGCATCCAGAAGTTGTGAAGACATTTGATGAGGAGTCTCCTTGGGCAATTTATGAGTTAGCATGCGGTGCCTTTCACACTGCTTTGCTCACTCGCAAAAAGAATCCTGATGACGCATCAGAAAGCATTTGCTGGACCTTTGGTCGAGGGGATAATGGCCAACTCGGGCACGGAACAACGCAAAGCACTTTGCTTCCTACACCGGTAATAGAATTGCCAGAAAATGTACATCTTGTTTGTGTTGACTGTGGTTTGTTTCATACTAGTGTTGTTTCCTCTGCCGGGGATGTGTGGTCATGGGGAATGCAGAAGGGTCTTGGCTTATGCCCTGATGTTAGTCGCGCTGAATCAGATTCTGGTGATGCACTCAATCCCCGTCTCATCTCATGCGAACCTCATCAACCCAAGTTTCCTGATCCAGATAAAGTCGTGTGTGGGGCGGCACATACTGTTGTTGTTGGGCAGGAAGGTTATAAGGTTTGGGCTTGGGGTAGGGGAAGGAGTGGAGTTCTTGGAAATGGTGAGGGAGTGGATTGTCACATTCCCACCCTTGTGTTGTGGCCACCAATGTTGGATGATTCCGAGGAAAAGGAACCTGATGCAAAATCAGAAACAGATGAGAAATTATCCTCAGCATTGAATGAGCTGAACCTGCTTCAAACAAAGTTATCTATAATGGAGAAATATGCTGGCATACTTCATGGTTCTGTTTTTGGAAAACCTTTTGATGAGAAAGATATCCCTGTTTCGTTGCAGAGTTCAGGTTCTTTTGATATTGGCAAAGAATGGGACAACATGTTAGAGGCAGCAGATAATAGGAAGCTAGCTAGGTTGGAAATGTTTTACCGTGACATGCTTGCTGGTGTGAAAGATAAATTGATGAAGAGAAAGATCAAGGATATGATAAAGGAGTGTCTTCAATCTTCAGATGTAAAAAAATCGTATCAGTGA 1413 0.4452 MDGQLGNNGEDSNEEKYTEGDYSLVPCLLNKFIGLHPSDSSTSVSEGEGKESLRICAVKAGGMMSLAIDNRGTLWMWGNCPQESKEGALSFETSFIPAPVWDFHGRVVVKVSCGNEHVVALVSATESYNGEDLVCYSWGHNNHGQLGVGDRESRLHPEVVKTFDEESPWAIYELACGAFHTALLTRKKNPDDASESICWTFGRGDNGQLGHGTTQSTLLPTPVIELPENVHLVCVDCGLFHTSVVSSAGDVWSWGMQKGLGLCPDVSRAESDSGDALNPRLISCEPHQPKFPDPDKVVCGAAHTVVVGQEGYKVWAWGRGRSGVLGNGEGVDCHIPTLVLWPPMLDDSEEKEPDAKSETDEKLSSALNELNLLQTKLSIMEKYAGILHGSVFGKPFDEKDIPVSLQSSGSFDIGKEWDNMLEAADNRKLARLEMFYRDMLAGVKDKLMKRKIKDMIKECLQSSDVKKSYQ* 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3698 470 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 196 248 IPR000408 -
Lja1g3698 470 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 11 467 - -
Lja1g3698 470 Pfam Regulator of chromosome condensation (RCC1) repeat 136 184 IPR000408 -
Lja1g3698 470 Pfam Regulator of chromosome condensation (RCC1) repeat 199 244 IPR000408 -
Lja1g3698 470 Pfam Regulator of chromosome condensation (RCC1) repeat 314 342 IPR000408 -
Lja1g3698 470 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 174 184 IPR000408 -
Lja1g3698 470 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HERC2-LIKE PROTEIN 11 467 - -
Lja1g3698 470 Coils Coil 356 376 - -
Lja1g3698 470 Gene3D - 1 364 IPR009091 -
Lja1g3698 470 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 133 187 IPR000408 -
Lja1g3698 470 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 72 124 IPR000408 -
Lja1g3698 470 SUPERFAMILY RCC1/BLIP-II 41 342 IPR009091 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3698 Lja-Chr1 46282835 46284522 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3698 - - lja:Lj1g3v2068690.1 979.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3698 1 46282835 46284522 Lja1g3698 1 46282835 46284522 ECH