Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3683 ATGAAATTACATAAAGCCACACGCTTGTCTCTCCCAAATGTGGCTGTGGTGGATGATGTTACATGCTCCCCGCCACCGGTGATGGCGGAGAAAGTGATCAAAACGATGCGTTACTTGATCCAAAACGGTAAGAGCAAGATGATGCAGGACATGCAGAAGAGAGGGAAAAGCATAGGGAAGGCGCTGAACAACGCGGTGGTGCGCCACCACGAGGCGCTAACATGCCGTCCGCGTGACGCGGAGATGTATTTTGTGTCGCCGTTGGAGTACCAGTTCAGCTGCAACGGCAGTCCGCCACGGCTGATTGATTCGTCCAGGAGTAGGAGGAGCAGGCTACTGTCTCCGGCTAGTGAGCACGGGCGGAAGGTGATGAGGATTTGCCGTGGCGATGATGAGGTGTTGGTGGGGAGGCGCGTGCAGGTGGCCGTGGCGGAGAAGGAGTTTCAGGTGGACGAGGCGGCGGAGGAGTTCATAGAGAGGTTTTACAGAGATCTCAGGTTGCAGAAATGGTTGGATCATTGTTGCTGA 528 0.5511 MKLHKATRLSLPNVAVVDDVTCSPPPVMAEKVIKTMRYLIQNGKSKMMQDMQKRGKSIGKALNNAVVRHHEALTCRPRDAEMYFVSPLEYQFSCNGSPPRLIDSSRSRRSRLLSPASEHGRKVMRICRGDDEVLVGRRVQVAVAEKEFQVDEAAEEFIERFYRDLRLQKWLDHCC* 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3683 175 Pfam Cotton fibre expressed protein 149 169 IPR008480 -
Lja1g3683 175 PANTHER AVR9/CF-9 RAPIDLY ELICITED PROTEIN-RELATED 23 173 - -
Lja1g3683 175 PANTHER DUF761 DOMAIN PROTEIN 23 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3683 Lja-Chr1 46015396 46016226 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3683 - - mtr:MTR_3g109920 180.259