Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3678 ATGGAAGACGAGGATCGCGACAGATTGCTTGAGAGAGAGCGACACCAAATTCAACAGATTCGCCAACTCGATCTCGAAGAGCTTGAAGTCGAAGAAGTAGATGACCACCCCTCCTCCGAGTCCGATGACGACGGCGCCGACGCTGACGACGGCGAACCCGACCCTACCTATTTCGCAGTTGACTCATCCGGTGTATTCACTTTCAATACCTCTGTAGCTTCGTTGCATACATATCTTGGTGATGTTGAAGACACACGCCACAGGGCTGCTTTCTTCGATGGCGGTACCGTATTGAACGTTCCGCTGTTTTGTCTCCCAGGAGTTGTACTCTTTCCTGGGGCTACACTTCCCCTTAGAGTTATTGAGGCCCACTTTGTGGCTGCTATTGATAGAGCTTTGAGTCAAGTTGACGTTCCTCTCACAATTGGTGTGATTCGGATTCACAGGGACACTCCAAATCGGAGGATGAAATCAGCAACCATTGGGACAACTGCTGAGATTCGACAATACGGGCGTCTAGAGAATGGTTCACTGAATGTGGTTACTCGTGGACAACAACGATTTCGCCTAAGACGGTGTTGGGTTGACGTGGAAGGAGTGCCTTATGGAGAGGTCCAAATTATTGAGGAAGATGTACCATTGAGAACTCCTAGGGATGCTTTTGACCAAGTACCCTCATCAAGTAATATGTCCTGTAGCCACGCCGTCTTACATACACCATCTTCAAAACATTCTCATGTCAAAATGGAAGAGTTAAAAAATGGTGAAAGTGATTCTGAAGCAAATTCAGATGGGAGTTTCGAGAGGGAGCTTTCACAAATGGAACGAAAAATCCACCTATCAGTCATTGGCTCCAGTCATGTGCGTGATATGATGGATGAATCAGCAAGCAGCAGTGATGTTAAACTCATGAATAAGTCAGATCAGGAAATTAGATCCAATCAGGATTTGAGCATTGGGAACTGTTCCACTTCTGGAAAGCAGTCATCGAAAGAAGAGCTTAATAGATGCTATAAAAATGTATATAACCGCCCATCACATAAAATTTCAAAAACATTCTTGCCCCACTGGGTATATAGAATGTATGACTCCTATTGGCTTGCACAAAGGGCTGCAGATATGTGGAAGCGAATCGTTGGGGTGCCTAGCATGGACAGTCTCATTAAGACGCCTGATATTTTATCATTTCATATCGCCAGTAAAATACCTATGTCTGAATCTACAAGGCAGGAGCTTTTGGAAATTGATGGCATTGCTTATAGGTTACGCAGGGAAATTGAATTGTTAGAGAGCATTGATGTTATCCGATGTAAAAGCTGCCTAACTGTAATTGCAAAAAGAAGTGATATGTTGGTGATGTCAAGTGAGGGACCTCTTGGCGCCTATGTAAATCCAGGTGGTTATGTGCATGAGATAATGACCCTTTACAAGGCCAATGGCTTAGCTCTCCTTGGACCACCAGTGACAGAATACAGTTGGTTTCCTGGGTATGCATGGACAATAGCCACCTGTGCCACATGTAAAATCCAAATGGGGTGGCTTTTTACAGCCACAAACAAAAAGATGAGACCAAACTCATTTTGGGGGATTAGGAGCTGTCAAGTTGCAGAACAAAAACGGCAAAACCTTTAA 1632 0.4455 MEDEDRDRLLERERHQIQQIRQLDLEELEVEEVDDHPSSESDDDGADADDGEPDPTYFAVDSSGVFTFNTSVASLHTYLGDVEDTRHRAAFFDGGTVLNVPLFCLPGVVLFPGATLPLRVIEAHFVAAIDRALSQVDVPLTIGVIRIHRDTPNRRMKSATIGTTAEIRQYGRLENGSLNVVTRGQQRFRLRRCWVDVEGVPYGEVQIIEEDVPLRTPRDAFDQVPSSSNMSCSHAVLHTPSSKHSHVKMEELKNGESDSEANSDGSFERELSQMERKIHLSVIGSSHVRDMMDESASSSDVKLMNKSDQEIRSNQDLSIGNCSTSGKQSSKEELNRCYKNVYNRPSHKISKTFLPHWVYRMYDSYWLAQRAADMWKRIVGVPSMDSLIKTPDILSFHIASKIPMSESTRQELLEIDGIAYRLRREIELLESIDVIRCKSCLTVIAKRSDMLVMSSEGPLGAYVNPGGYVHEIMTLYKANGLALLGPPVTEYSWFPGYAWTIATCATCKIQMGWLFTATNKKMRPNSFWGIRSCQVAEQKRQNL* 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3678 543 Pfam ATP-dependent protease La (LON) substrate-binding domain 100 430 IPR003111 -
Lja1g3678 543 SMART lon_5 99 431 IPR003111 -
Lja1g3678 543 Pfam Yippee zinc-binding/DNA-binding /Mis18, centromere assembly 434 525 IPR004910 -
Lja1g3678 543 ProSiteProfiles CULT domain profile. 432 539 IPR034750 -
Lja1g3678 543 MobiDBLite consensus disorder prediction 243 270 - -
Lja1g3678 543 Gene3D - 363 427 - -
Lja1g3678 543 PANTHER BNAA09G40760D PROTEIN 7 536 - -
Lja1g3678 543 Gene3D Peptide methionine sulfoxide reductase. 428 543 - -
Lja1g3678 543 PANTHER CEREBLON 7 536 - -
Lja1g3678 543 MobiDBLite consensus disorder prediction 27 51 - -
Lja1g3678 543 MobiDBLite consensus disorder prediction 25 55 - -
Lja1g3678 543 ProSiteProfiles Lon N-terminal domain profile. 100 431 IPR003111 -
Lja1g3678 543 CDD CRBN_C_like 435 531 IPR034750 -
Lja1g3678 543 Gene3D - 80 208 IPR046336 -
Lja1g3678 543 SUPERFAMILY PUA domain-like 99 430 IPR015947 -
Lja1g3678 543 MobiDBLite consensus disorder prediction 238 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3678 Lja-Chr1 45907638 45913135 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3678 K11793 - gmx:100779918 707.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3678 1 45907638 45913135 Lja1g3678 1 45907638 45913135 ECH