Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3677 ATGCGTGTCTCTCATTTCGCGGTTTCTTCATCCTTCGCACCTTCACTGTCTTGTGCTTCAACCCTTCTTCGTTCTCGCCTCAGAACCCCAAGCATTCGTTGCTGTACAACTCTATCTGCAACTTCTTCCGAGACGCAAACTCCCGCTACAACTTCTGTAAAGAAGCGGGTAGTGTCGGGAGTTCAGCCCACAGGCTCAGTTCACCTCGGAAACTATCTCGGTGCTATCAAGAATTGGGTTGCACTTCAGCATGCATATGATACACTTTTCTTAATTGTGGACCTTCATGCGATTACATTGCCTTATGATGCACAACAATTATCTAAGGCTACAAGGTCAACTGCAGCCATTTATCTAGCATGTGGGGTGGATCCTTCAAAGGCCTCAGTATTTGTACAGTCTCATGTTCGCGCACATGTAGAATTGATGTGGCTGCTAAGTTCCACAGCACCAATTGGTTGGCTGAACAAAATGATTCAGTTTAAAGAGAAATCTCGCAAGGCGGGAGACGAAGAAGTTGGAGTTGCCCTTTTGACTTATCCTGTTCTGATGGCTTCTGATATACTTCTATATCAGTCTGATTTGGTCCCTGTTGGGGAAGATCAAAAGCAGCATTTGGAGTTGACCCGTGACTTGGCAGGGCGGGTTAATAATTTATATGGAGGACGAAAGTGGAAGAAATTGGGCGGCCGAGGTGGTACTATATTTAAGGTTCCAGATCCCCTTATACCTCCAGCTGGAGCCCGGATTATGTCCCTAACTGATGGCCTGTCCAAGATGTCAAAGTCTGCACCTTCCGATCAATCCAGAATCAATATTCTTGATCCTAAAGATCTTATAGCAAACAAGATCAAACGTTGCAAAACTGATTCAATTCCAGGCATGGAATTCGACAATCCTGAGAGGCCTGAATGTAATAATCTTCTCTCCATATATCAGATCATTTCTGGAAAGACAAAAGAGGAAGTTGTGCAGGAATGCCAAAACATGAACTGGGGTACATTCAAACCTCTTTTAACCGATGCCTTGATTGATCATTTGCAACCCATTCAGGTTCGCTATGAGGAAATCATGTCTGATTCAGGTTATTTAGATGAAGTTTTGGCAAAGGGAGCTAGAAATGCAGCAGAAATAGCAGATGCCACACTTCAAAATGTTTACCAAGCAATGGGATTTTTGAGGAGACAGGGATAA 1194 0.4389 MRVSHFAVSSSFAPSLSCASTLLRSRLRTPSIRCCTTLSATSSETQTPATTSVKKRVVSGVQPTGSVHLGNYLGAIKNWVALQHAYDTLFLIVDLHAITLPYDAQQLSKATRSTAAIYLACGVDPSKASVFVQSHVRAHVELMWLLSSTAPIGWLNKMIQFKEKSRKAGDEEVGVALLTYPVLMASDILLYQSDLVPVGEDQKQHLELTRDLAGRVNNLYGGRKWKKLGGRGGTIFKVPDPLIPPAGARIMSLTDGLSKMSKSAPSDQSRINILDPKDLIANKIKRCKTDSIPGMEFDNPERPECNNLLSIYQIISGKTKEEVVQECQNMNWGTFKPLLTDALIDHLQPIQVRYEEIMSDSGYLDEVLAKGARNAAEIADATLQNVYQAMGFLRRQG* 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3677 397 CDD TrpRS_core 56 344 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Lja1g3677 397 Hamap Tryptophan--tRNA ligase [trpS]. 54 393 IPR024109 GO:0004830
Lja1g3677 397 PRINTS Tryptophanyl-tRNA synthetase signature 259 269 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Lja1g3677 397 PRINTS Tryptophanyl-tRNA synthetase signature 117 136 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Lja1g3677 397 PRINTS Tryptophanyl-tRNA synthetase signature 67 83 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Lja1g3677 397 PRINTS Tryptophanyl-tRNA synthetase signature 194 215 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Lja1g3677 397 Gene3D - 252 362 - -
Lja1g3677 397 Gene3D HUPs 57 391 IPR014729 -
Lja1g3677 397 Pfam tRNA synthetases class I (W and Y) 55 348 IPR002305 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Lja1g3677 397 PANTHER TRYPTOPHAN--TRNA LIGASE, MITOCHONDRIAL 50 392 - -
Lja1g3677 397 TIGRFAM trpS: tryptophan--tRNA ligase 54 392 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Lja1g3677 397 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 63 72 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Lja1g3677 397 SUPERFAMILY Nucleotidylyl transferase 55 392 - -
Lja1g3677 397 PANTHER BNAA04G15180D PROTEIN 50 392 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3677 K01867 - gmx:100780447 688.723
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3677 1 45894602 45901777 Lja1g3677 1 45894602 45901777 ECH