Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3673 ATGGCAGGTTCCGGTAGTCCCAACGGTGGTTCTACACCGCCACCGCCGCCTCCAACTCAACAAGTTGGATTCTCAAAACCCATTTCCCTTGCTGGCCCTAGCGATGCTGATATCCAACGGAACCTCGAATTGGAGAAGTTCATGCTTGATTCTGGGCTTTACGAGAGTGATGAAGAAGCTGCAGCCAGACGAGAAGTCCTTCGCCGCCTTGACCAGATTGTGAAAAGTTGGGTGAAGCAGGTGACTCGTCAACGAGGCTACACCGATCAGATGGTTGATGATGCAAATGCTGTCATTTTCACTTTTGGCTCTTATCGCCTTGGGGTTCATGGACCAGGAGTTGACATAGACACTTTGTGCATTGGTCCTTCTTATGTGAATCGAGAGGTGAAACACTTCTGCTTATTACTTTTGCTCAATTCAGTAAACTCCTTGGCATTGGTTTCATATTTTAGCCAATATAATTCTCTTTTGCAGGAAGACTTCTTTTTTGGTTTACATGACATTTTGGCTGAAATGGAAGAAATTACTGAACTTCAACCAATTAATGATGCACATGTCCCAGTAATGAAATTCAAGTTCCAGGGAATTTCTATAGATTTGCTGTATGCAAGCATATCTCTTTTGGTTGTGCCAGAAGACGTGGATATCTCACAAGGTTCTGTGCTGCATGATGTTGATGAACAAACTGTTCGAAGTCTTAATGGCTGCCGGGTGGCAGATCAGATTCTGAAACTTGTTCCTAATGTTGAGCACTTCCGTACTACGCTGAGATGTTTAAAGTTTTGGGCTAAAAGGCGTGGTGTGTATTCAAATGTTACTGGATTCCTTGGCGGTGTAAATTGGGCTATTTTAGTCGCTCGACTGTGCCAGTTTTACCCTAATGCAATTCCTAGTATGTTGGTTTCTCGATTCTTTCGGGTCTATACACAGTGGCGGTGGCCAAACCCTGTAATGCTATGCTCTATAGAAGAAAATGAACTCGGTTTCTCTATATGGGATCCTCGTAAAAACTCCCGGGACAGATTGCACACTATGCCAATTATTACTCCTGCATACCCTTGCATGAATTCCAGCTACAATGTCTCAGCAAGCACTCTTCGTGTTATGATGGAACAGTTCCGCCATGGCAACAAGATTTGTGATGAAATTGAGCTCAACAAATCCCAGTGGAGTGCACTTTTTGAACCATATGTCTTTTTTGAGGCATACAAAAACTATTTACAAGTAGACATACTTGCATTAGATGCTGATGACTTACTAGCGTGGAAGGGTTGGGTAGAATCTCGGTTGAGACTGCTAACCTTGAAGATTGAGCGAGATACCAATGGGATGCTGCAGTGTCATCCTTATCCACACGAGTATGCAGACACATCCAAGCCTTGCGCACATTCTGCATTTTTCATGGGTTTGCAAAGAAAAGAGGGAGTAAAAGGTCAAGAGGGACAGCAATTTGATATACGCGGAACAGTTGATGAATTCAGACAAGAAATAAATATGTTGTATACATACTGGAAGCCTGGGATGGAAATTTATGTTTCTCATGTTCGTCGAAAGAAGCTCCCTGCATTTGTTTTTCCAGATGGTTACAAACGTTCTCGAATACCAAGGAATTTAAGCCATACAGCTGAAAAAATGGGCGATGATACTCCAATGTGCAACTCTGGGTCTAGGTCTTCTGAAAGATGCGTCAAGAGGAAAAGTAACCCTGAAATGGTGGATGTGAAGCCAGATAAATCAGAGAAGCGGGCATCTGTTAGCCCACAAAATGTTTCTCCGGCGAGTTGTTCTAGTAAATCAGGTGGCACACCTCAAATGAGTATTGAGGATATCGAAGGAGTTAGGTTAGCTAGCTCAACAATGAAAGATGCTGACAGCAACTCTGGAATTAAGTCATCTTATGGACTCCTAGGAAGTGGAACCAATATTGAAGTACGCAACGTGCAGATTAGTGAAACAGGTTCTGTTGACTCCACACGGCTGAAACAAGTTCAGAATGAGAATGTAGTCAATGGGGATAAAGCTCGTGATCTGGGTTTAGATTGCTTGGAAAATGCAGAAACTGCAGCTACCAAAAGCTTGTCAAACTGGAAAGACGGCACTGTTGGTATGGAACAACAACTAGACAAAGGTTGTACTTTCACCAAAAGGGCCGAATGTTCAGATTTTGTACCGAGTGCCAGCACCCAGAGCCTCAATTGTGAGATGTCAGACTCAGAAGTGTTGTATAAATTGAAGATGGGGCTAGGAGGATGA 2256 0.4326 MAGSGSPNGGSTPPPPPPTQQVGFSKPISLAGPSDADIQRNLELEKFMLDSGLYESDEEAAARREVLRRLDQIVKSWVKQVTRQRGYTDQMVDDANAVIFTFGSYRLGVHGPGVDIDTLCIGPSYVNREVKHFCLLLLLNSVNSLALVSYFSQYNSLLQEDFFFGLHDILAEMEEITELQPINDAHVPVMKFKFQGISIDLLYASISLLVVPEDVDISQGSVLHDVDEQTVRSLNGCRVADQILKLVPNVEHFRTTLRCLKFWAKRRGVYSNVTGFLGGVNWAILVARLCQFYPNAIPSMLVSRFFRVYTQWRWPNPVMLCSIEENELGFSIWDPRKNSRDRLHTMPIITPAYPCMNSSYNVSASTLRVMMEQFRHGNKICDEIELNKSQWSALFEPYVFFEAYKNYLQVDILALDADDLLAWKGWVESRLRLLTLKIERDTNGMLQCHPYPHEYADTSKPCAHSAFFMGLQRKEGVKGQEGQQFDIRGTVDEFRQEINMLYTYWKPGMEIYVSHVRRKKLPAFVFPDGYKRSRIPRNLSHTAEKMGDDTPMCNSGSRSSERCVKRKSNPEMVDVKPDKSEKRASVSPQNVSPASCSSKSGGTPQMSIEDIEGVRLASSTMKDADSNSGIKSSYGLLGSGTNIEVRNVQISETGSVDSTRLKQVQNENVVNGDKARDLGLDCLENAETAATKSLSNWKDGTVGMEQQLDKGCTFTKRAECSDFVPSASTQSLNCEMSDSEVLYKLKMGLGG* 752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3673 751 Gene3D Beta Polymerase, domain 2 55 209 IPR043519 -
Lja1g3673 751 MobiDBLite consensus disorder prediction 1 30 - -
Lja1g3673 751 CDD NT_PAP_TUTase 62 247 - -
Lja1g3673 751 Gene3D Poly(A) polymerase predicted RNA binding domain 399 516 - -
Lja1g3673 751 MobiDBLite consensus disorder prediction 584 605 - -
Lja1g3673 751 PANTHER POLY A POLYMERASE 6 136 - -
Lja1g3673 751 SUPERFAMILY PAP/Archaeal CCA-adding enzyme, C-terminal domain 400 527 IPR011068 GO:0003723|GO:0016779|GO:0031123
Lja1g3673 751 MobiDBLite consensus disorder prediction 560 583 - -
Lja1g3673 751 Pfam Poly(A) polymerase predicted RNA binding domain 400 459 IPR007010 GO:0003723|GO:0043631
Lja1g3673 751 Pfam Poly(A) polymerase predicted RNA binding domain 462 533 IPR007010 GO:0003723|GO:0043631
Lja1g3673 751 PANTHER NUCLEAR POLY(A) POLYMERASE 4 6 136 - -
Lja1g3673 751 PANTHER NUCLEAR POLY(A) POLYMERASE 4 159 647 - -
Lja1g3673 751 SUPERFAMILY PAP/OAS1 substrate-binding domain 248 397 - -
Lja1g3673 751 Pfam Poly(A) polymerase central domain 23 397 IPR007012 GO:0004652|GO:0043631
Lja1g3673 751 Pfam Nucleotidyltransferase domain 96 193 IPR002934 GO:0016779
Lja1g3673 751 SUPERFAMILY Nucleotidyltransferase 19 246 IPR043519 -
Lja1g3673 751 Gene3D - 216 397 - -
Lja1g3673 751 MobiDBLite consensus disorder prediction 537 606 - -
Lja1g3673 751 PANTHER POLY A POLYMERASE 159 647 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3673 Lja-Chr1 45847319 45854545 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3673 K14376 - gmx:100802620 1139.79