Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3660 ATGGCTTCTTCCAAGAGACCGAATGCGGAGTCGAAGAGGAAAGGGAAACGCCAGAAATCCGGTGGTGGTGGTTCTTCATCGTTGGATGCGGCTGCTGGCGGTGTTGTTTTCCGTATGCTCTGCCCTGCTACTAGAATAGGCGGTGTAATCGGCAAAGGTGGTGGCATCATATCACAAATTCGCCAGGAAACCGGTGTCAATATTAAGATTGACGAGCCTACACCTGGTTGTGATGAGAGGGTTATCATTTTCTCGGGTTCTGAAAAGGAAAACGGAGAAGACAACGTTGACAAGGAAAAGGAAAAGGAAAAGGAAAAGGAGGCTAGTAATGATGAGACTGAGAGCAAAGGGAAGGGTGATGAGGAGGAAGAGGCTGAAGAAAAGGGTGGTGATAATGATGATGTTGAAGATAAAGAGGTTGAAGATTCGCAGGGCGAGAAGGCGAATTCGAATTCGGTTATTCATTCGGCTATTCGGAAGGCTCTGTCATTAGTTTTTGATAGGATGGTTGAAGGAGTGGAGGATACAGCTGATGGTGATGAAGAAAGTGGTAAAGCTTCTTCGTTTGTGTTTAGGCTGCTGATCCTTTCTAATCAAGTTGGCTGCCTTCTGGGTAAGGGTGGGAGTGTGATCAAGAAAATGTCAGCTGAAAGCGGGGCGCAGATTCGGATTCTTCCTAAAGATAAACTTCCTGTGTGTGCTTCAGCATCTGATGAGATTGTTCAGATCACAGGAGGAGTTGAAGTTGTCAGGAAAGCTCTTCAATCTGTCTCTCTCCAACTTTTGGAAAATCCACCTCGTGACCATGAATCCCTGTCTACCAATTTTACTGGGCCGTCATCTCATTCATCTAGTAAAATCCCATCACACAATCGTTCCTTTGCTGCGGGGCCTACTGATACTTCTGTTTTCCATTCTGCTCCTTCTCTGATTTCCAAATTTCATGAAGGCGCCATCCATGGTCGTATGAGGCCTTCACAGGAAATGCTTACATTTCGTTTATTGTGTCCTGCCGAAAAGGTAGGAAATTTAATTGGTAAAGGTGGAGCAATCATAAAGTCTGTGCAGCAAGAGACAGCTAGTGAAATCAAGGTCATAGATGCCGTTCCTGATTCAGAGGACTGTGTTATTGTCATATCTGGTCCAGCGCACCCTGATGATAGAATATCACCCGTGCAAGAAGCTGTGTTTCGTGTGCAAAATAGAGTAGCCAGGGCTATACCCGATGTGAACGAGCACAGTATGCTAGCAAGGGTTCTTGTTTCTTCAAATCAAATAGGTTGTCTCCTTGGCAAGGGTGGTTCCATCATAACTGAAATGAGGAAGTTATCAGGTGCCCATATCCGTATATTAGGAAAGGATAAGATTCCTAAGTGTGCTTCAGAAAATGAAGAAGTAATTCAGATAACTGGAGAAATTGAGGCAGTGCATGATGCTCTTTTGCAAATAACCACAAGATTAAAACATCATTTCTTTCGTGATGCATATCCATCTGCCAATTATCCTTCAAATCCTGCATTTTTAGATAACCTTCCTCCATTCCTGCCTTATTTGGGGAGGCGAGGGATTTCACCTCCTGGAATGTATTCTGATCTAGGTCCACCACCTCCACATGCGGGTTTTCCCCTTGATGATCGCCCTCCTTTTATGAATAATATACACAGATCAGGCATTCCTCCTCACATTGCTGAAAGGAAGCCTTGGGGTCCTCAGGGGATACTTGAAGGTGGTGGACACATGGGCTTGCCAGACTTTGCCGGAGGTCCTCCTAGAAGAATTTTGGGATTTGGAGGAGGGAACCAACCGATTATCACTCACACAAGTGCCACTGTCGAAGTTGTTGTTCCTCGAGCGGTGGTGCCTGAAATATATGGGGAAGATGGTGAATGCCTGAGACAAATACTTCAGATCTCTGATGCAAAGATTATGATTACTGATCCAAAGCCCGGAGCTGTGGAAACTAAAATTATAATTTCTGGAACCCCAGAGCAAACTCATGCTGCACAAAGTCTTATTCAGGCGTTTGTCATGAGTGAGAGGGATTCTGGTTGA 2052 0.4498 MASSKRPNAESKRKGKRQKSGGGGSSSLDAAAGGVVFRMLCPATRIGGVIGKGGGIISQIRQETGVNIKIDEPTPGCDERVIIFSGSEKENGEDNVDKEKEKEKEKEASNDETESKGKGDEEEEAEEKGGDNDDVEDKEVEDSQGEKANSNSVIHSAIRKALSLVFDRMVEGVEDTADGDEESGKASSFVFRLLILSNQVGCLLGKGGSVIKKMSAESGAQIRILPKDKLPVCASASDEIVQITGGVEVVRKALQSVSLQLLENPPRDHESLSTNFTGPSSHSSSKIPSHNRSFAAGPTDTSVFHSAPSLISKFHEGAIHGRMRPSQEMLTFRLLCPAEKVGNLIGKGGAIIKSVQQETASEIKVIDAVPDSEDCVIVISGPAHPDDRISPVQEAVFRVQNRVARAIPDVNEHSMLARVLVSSNQIGCLLGKGGSIITEMRKLSGAHIRILGKDKIPKCASENEEVIQITGEIEAVHDALLQITTRLKHHFFRDAYPSANYPSNPAFLDNLPPFLPYLGRRGISPPGMYSDLGPPPPHAGFPLDDRPPFMNNIHRSGIPPHIAERKPWGPQGILEGGGHMGLPDFAGGPPRRILGFGGGNQPIITHTSATVEVVVPRAVVPEIYGEDGECLRQILQISDAKIMITDPKPGAVETKIIISGTPEQTHAAQSLIQAFVMSERDSG* 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3660 683 CDD KH-I 59 89 - -
Lja1g3660 683 CDD KH-I 623 673 - -
Lja1g3660 683 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 3 542 - -
Lja1g3660 683 ProSiteProfiles Type-1 KH domain profile. 329 396 - -
Lja1g3660 683 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 180 263 IPR036612 GO:0003723
Lja1g3660 683 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 415 497 IPR036612 GO:0003723
Lja1g3660 683 Pfam KH domain 610 673 IPR004088 GO:0003723
Lja1g3660 683 Pfam KH domain 37 89 IPR004088 GO:0003723
Lja1g3660 683 Pfam KH domain 331 383 IPR004088 GO:0003723
Lja1g3660 683 Pfam KH domain 192 256 IPR004088 GO:0003723
Lja1g3660 683 Pfam KH domain 418 483 IPR004088 GO:0003723
Lja1g3660 683 ProSiteProfiles Type-1 KH domain profile. 34 103 - -
Lja1g3660 683 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 29 88 IPR036612 GO:0003723
Lja1g3660 683 CDD PCBP_like_KH 418 484 - -
Lja1g3660 683 ProSiteProfiles Type-1 KH domain profile. 188 257 - -
Lja1g3660 683 PANTHER KH DOMAIN-CONTAINING PROTEIN HEN4-LIKE 3 542 - -
Lja1g3660 683 MobiDBLite consensus disorder prediction 117 140 - -
Lja1g3660 683 MobiDBLite consensus disorder prediction 1 31 - -
Lja1g3660 683 ProSiteProfiles Type-1 KH domain profile. 414 483 - -
Lja1g3660 683 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 607 677 IPR036612 GO:0003723
Lja1g3660 683 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 322 384 IPR036612 GO:0003723
Lja1g3660 683 SMART kh_6 187 262 IPR004087 GO:0003676
Lja1g3660 683 SMART kh_6 607 677 IPR004087 GO:0003676
Lja1g3660 683 SMART kh_6 413 488 IPR004087 GO:0003676
Lja1g3660 683 SMART kh_6 33 108 IPR004087 GO:0003676
Lja1g3660 683 SMART kh_6 328 404 IPR004087 GO:0003676
Lja1g3660 683 CDD PCBP_like_KH 190 258 - -
Lja1g3660 683 Gene3D K Homology domain, type 1 327 406 IPR036612 GO:0003723
Lja1g3660 683 CDD PCBP_like_KH 331 400 - -
Lja1g3660 683 MobiDBLite consensus disorder prediction 84 152 - -
Lja1g3660 683 MobiDBLite consensus disorder prediction 84 116 - -
Lja1g3660 683 Gene3D K Homology domain, type 1 33 102 IPR036612 GO:0003723
Lja1g3660 683 Gene3D K Homology domain, type 1 605 680 IPR036612 GO:0003723
Lja1g3660 683 ProSiteProfiles Type-1 KH domain profile. 608 672 - -
Lja1g3660 683 MobiDBLite consensus disorder prediction 265 299 - -
Lja1g3660 683 Coils Coil 89 116 - -
Lja1g3660 683 Gene3D K Homology domain, type 1 185 265 IPR036612 GO:0003723
Lja1g3660 683 Gene3D K Homology domain, type 1 412 490 IPR036612 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3660 Lja-Chr1 45679857 45684939 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3660 K21444 - gmx:100777433 942.184
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3660 1 45679857 45684939 Lja1g3660 1 45679857 45684939 ECH