Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3649 ATGTGTAATTCCAAACCATCTTCAGCAATATCCCCATTCCTTTGTCCCACAAAAACCAAAGACATGATGAATCTTCCTCTTGATGATCAATTTCAAGATGAACTTCACAGATGGCCAACCACTAAGGAGGTCTTGGAAGAAATGAAGGCCATAGGGAAAATATCAGGCCCAACAGCTATCACTGGTTTGGTCTTATACTCTAGAGCCATGATCTCCATGCTCTTCCTCGGCTACCTTGGCGATGCGGAACTCGCCGGAGGCTCACTCGCCATCGGTTTCGCCAACATCACCGGCTACTCTGTCATCTCCGGCTTAGCCATGGGAATGGAACCTATCTGCGGACAAGCCTATGGAGCAAAACAATGGAAGATTCTCGGCTTAACCCTTCAAAGAACCGTACTCCTCCTTCTCTCAACTTCCATCCCCATTTCACTGACATGGCTCAACATGAAGAGAATCCTTTTGTTTTGTGGCCAAGACGAAGAGATTTCATCAAAGGCACAAATTTTCATTCTCTTTTCCATACCAGACCTCTTTTTTCTCTCACTCCTCCACCCTCTTCGTATTTACCTCAGAACTCAGAGCATAACATTGCCATTATCATATTGCTCTGCTTTCTCTGTTTTACTCCATATTCCCTTGAATTTCCTTCTAGTTGTGCATTTCAAAATGGGGATAGCAGGGGTAGCCATTGCAATGGTTTGGACTAACCTCAACTTCTTCCTCTTCCTCTTCTCCTTTGTTTACTTCTCTGGTGTTTACAAAGATTCATGGGTTTCTCCGAGCATGGATTGCCTTAAGGGGTGGTCTTCATTACTTGCTCTGGCTATTCCAACTTGCATCTCTGTTTGTCTAGAATGGTGGTGGTACGAGCTCATGATCATGGTGTGTGGGCTTTTGGTGAACCCAAAAGCCACCATTGCTTCAATGGGGATTCTTATTCAAACAACATCGTTAGTCTATGTTTTTCCTTCATCTCTTAGTCTTGGTGTTTCAACCAGAGTGGGGAACGAGTTAGGAGCAAAAAACCCAGCAAAAGCCCGGGTTTCAATGATGGTGTCAATGTTTTGTGCTGTGGGCTTGGGCTTTTCAGCAATGGTGTTTACAACTTTGATGAGGCATCAGTGGGGGAGATTGTTCACCAATGATGAGGAAATTCTTGGTCTAACGGCCGCGGCATTGCCAATTATTGGGCTTTGTGAGCTCGGGAACTGCCCCCAGACCACGGGCTGCGGAGTGTTGAGAGGCAGTGCGCGGCCCGCGGTCGGGGCAAACATAAACTTGGGCTCTTTTTACCTTGTGGGTATGCCAGTGGCGATTGTTCTTGGGTTTGTGGTGAAGATAGGCTTTTCCGGGCTTTGGTTTGGGTTACTTGCGGCCCAAGGTACTTGTGCGGGTCTCATGCTGTTAGTTCTTTGCAGAACAGATTGGAATGCTCAGGTAGAAAGGGCAAAGGAGCTCACAAAAAATTCAGCTACTGATGCTGATGCTGATTCTTCTCTACCCACATTCACAAAAACAGTACTGAGTAGCAATGATGATCATCTTCAAAAGATAGTTATCAGTGATGATGAGGTTACTCAGACAGGGTTACTTGAAACAGACCCACTACTCATTAATTGA 1623 0.4566 MCNSKPSSAISPFLCPTKTKDMMNLPLDDQFQDELHRWPTTKEVLEEMKAIGKISGPTAITGLVLYSRAMISMLFLGYLGDAELAGGSLAIGFANITGYSVISGLAMGMEPICGQAYGAKQWKILGLTLQRTVLLLLSTSIPISLTWLNMKRILLFCGQDEEISSKAQIFILFSIPDLFFLSLLHPLRIYLRTQSITLPLSYCSAFSVLLHIPLNFLLVVHFKMGIAGVAIAMVWTNLNFFLFLFSFVYFSGVYKDSWVSPSMDCLKGWSSLLALAIPTCISVCLEWWWYELMIMVCGLLVNPKATIASMGILIQTTSLVYVFPSSLSLGVSTRVGNELGAKNPAKARVSMMVSMFCAVGLGFSAMVFTTLMRHQWGRLFTNDEEILGLTAAALPIIGLCELGNCPQTTGCGVLRGSARPAVGANINLGSFYLVGMPVAIVLGFVVKIGFSGLWFGLLAAQGTCAGLMLLVLCRTDWNAQVERAKELTKNSATDADADSSLPTFTKTVLSSNDDHLQKIVISDDEVTQTGLLETDPLLIN* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3649 540 Pfam MatE 57 217 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lja1g3649 540 Pfam MatE 278 440 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lja1g3649 540 TIGRFAM matE: MATE efflux family protein 67 454 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lja1g3649 540 CDD MATE_eukaryotic 47 483 IPR045069 GO:0042910|GO:1990961
Lja1g3649 540 PANTHER MULTIDRUG RESISTANCE PROTEIN 28 501 - -
Lja1g3649 540 PANTHER PROTEIN DETOXIFICATION 28 501 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3649 Lja-Chr1 45468439 45470333 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3649 K03327 - rcu:8288072 810.831
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3649 1 45468439 45470333 Lja1g3649 1 45468439 45470333 ECH