Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3648 ATGGCGTCATTCCGGCGAACCCTTTCGCCGGCGTATCACGACCGCCAGCACCTCAACGGCGCCGCCCTATCAGCCTCCTCGTCACCTTCTCACAAGGCTCCATCATCCAACACCAAGTACTCAGCTCTTGCGGCGGCGTTCCGGCGGGTGGTCGGTGATATCCTCATGCGGCGGAACAGTCGGAAGGGGCAGTGGCGAAGGGCTGTATACAGGTGCGTGCTCTGTTTCTTCGTAGGGTTTTTGTTAGGGATGTTCCCTTTCGGTCATGTGGTGGTGGAAGAAGAAGACGAAAACAACGTTCCGGTGTCGTTTGAGATCAAGCCGCCGAACTCCGGCGAGATGAAGCGGTTTGTGATTGATCCGGTTGTGAGTTTGAGCGCTGAGAAGCAGAGCCAGAGTTTGGTGGCGGTTGAGCGGTTCGATTTCGTGCCGAGGAAGCTGCTGATTGTGGTCACGCCGACTTACAACCGTGGGTTTCAGTCTTACTTTTTGAATCGGTTGGGTCAGGTGCTGCGGTTGGTGCCGCCGCCGGTTCTGTGGGTGGTGGTGGAAATGAAGGCGGCTTCGTTGGAGACTGCGGAGGTGCTGAGGAAAACGGGTGTGATGTATAGGCATTTGGTGTGCCCTGAGAATTCCACTGATGTGAAGGACAGAGGGGTTCATCAGAGGAACACAGCGTTGGAGCACATTGAACGCCATAGGCTTGATGGGATTGTTTACTTTGCAGATGATGATAATGTGTATTCTCTGGACTTGTTTGAGTCACTGAGAGACATAAGTCGCTTTGGAACTTGGCCCGTCGCCATGCTTGCACCGAGCAAGAACAAGGCTGTTTTGGAGGGTCCCGTATGTAATGCAAGTCAAGTGATTGGATGGCATACAAATGAGAAAAGTAAGAGGCTTCGCAGATTTCATGTGGACATGTCTGGATTTGCATTTAACAGCACAATCTTGTGGGATCCAAAGCGATGGCAACGCCCTACTTCAAACCCTATAAGACAATTAGACACCGTGAAGGAGGGTTTTCAAGAGACTAGCTTTATAGAACAATTGGTGGAAGATGAGAGTCAAATGGAAGCTTCACCTCATGGTTGTTTGAAAATAATGAATTGGCATCTCCATTTGGGTGCTCGTGATATAGATTATCCAAAGGGCTGGATGCTTCAGAAAAACCTAGATGCTGCCTTGAATGAAAATCTGCGGAAGTTAATATACCAAATATACTCCAATCTTATTGTTCTTCACTTCGTTCAGTCTATACTTCTCTTTGCATTATGA 1278 0.4953 MASFRRTLSPAYHDRQHLNGAALSASSSPSHKAPSSNTKYSALAAAFRRVVGDILMRRNSRKGQWRRAVYRCVLCFFVGFLLGMFPFGHVVVEEEDENNVPVSFEIKPPNSGEMKRFVIDPVVSLSAEKQSQSLVAVERFDFVPRKLLIVVTPTYNRGFQSYFLNRLGQVLRLVPPPVLWVVVEMKAASLETAEVLRKTGVMYRHLVCPENSTDVKDRGVHQRNTALEHIERHRLDGIVYFADDDNVYSLDLFESLRDISRFGTWPVAMLAPSKNKAVLEGPVCNASQVIGWHTNEKSKRLRRFHVDMSGFAFNSTILWDPKRWQRPTSNPIRQLDTVKEGFQETSFIEQLVEDESQMEASPHGCLKIMNWHLHLGARDIDYPKGWMLQKNLDAALNENLRKLIYQIYSNLIVLHFVQSILLFAL* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3648 425 PANTHER GLYCOSYLTRANSFERASES 1 395 - -
Lja1g3648 425 CDD GlcAT-I 146 375 IPR005027 GO:0015018|GO:0016020
Lja1g3648 425 Pfam Glycosyltransferase family 43 167 374 IPR005027 GO:0015018|GO:0016020
Lja1g3648 425 SUPERFAMILY Nucleotide-diphospho-sugar transferases 147 392 IPR029044 -
Lja1g3648 425 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 147 396 IPR029044 -
Lja1g3648 425 PANTHER GALACTOSYLGALACTOSYLXYLOSYLPROTEIN 3-BETA-GLUCURONOSYLTRANSFERASE BETA-1,3-GLUCURONYLTRANSFERASE 1 395 IPR005027 GO:0015018|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3648 Lja-Chr1 45429576 45435451 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3648 1 397 Glycosyltransferase AT1G27600 61.858 1.60e-177 499
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3648 K20869 - gmx:100809892 603.594
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3648 1 45429576 45435451 Lja1g3648 1 45429576 45435451 ECH