Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3647 ATGGCCGCTCCTCCGCCAACCAAGGACCAAGTCCTCTCTCTCCTCGCCGCTGCCAACAACCATGGTGACCTCTCCGTCAAAACCTCCTCCTTGAAACAAGCCAAAGACCTTCTTCTCTCCCTCGACCCCTCTCTCGCCGCCGACCTCTACCCTTACCTGCTCGAGCTTCAGTCTTCTCCCGAATCTCTCGTCCGCAAATTGCTCATCCAGATAATCGAGGAGATTGGTTTTAAAGCAGCTGAGGATTCTCCGAAACTGATATCGGTACTGCTAACATTTTTACGAGATAGTGATGTGGAGGTAGTAAAGCAGTCTATTGTTAGTGGCTCGAATATATTCTGTAGTGGTTTTGAGGAGTTAGTTGTGCAGTTTCAACAATGTGGTAAAGTTGAGAGGTGGTTAGAAGAGATTTGGATGTGGATGCATAGGTTCAAGGATGCTGTTTTTGGGATTGCTCTGGAGCCTGGTGCTGTTGGAATAAAGTTGCTGGCACTGAAATTCTTGGAAACGTTTATATTACTATTTACATCTGACAACAGCAATCCTGATAAACCAGCCACAGAAGGTGTCAGGAAAGCTGTTAATATATCATGGTTGGTCGGTGGTCACCCTGTTCTTGATCCAGTAGTGCTCATGTCTGAGGCAAATAGGACTCTTGGCACTCTATTAAATTTATTGCAGTCTGCTGGCAGTCTCCCGGGTTGTTTGACAATTACTGTTGTAAATTGTTTAGCAGCCATTGCAAGGAAAAGACCACAACACTATGATACTATCCTTTCAGCAATGCTTGATTTTAATCCAAATTTTCAAACAGTGAAAGGATGTCATGTTGCCAGTATTCAGTACTCCTTAAGAACAACTTTTTTGGGGTTTCTAAGATGCACTTATTCTCCAATACTAGAGTCTAGAGAAAGACTGATAAGGAGCCTGCGAGGTATGAATGCAGGGGATGCTGCTGATCAGGTCATTAGGCAAGTTGACAAAATGATCAAAAATGGTGATCGTTCTACCCGTGATGCTCGAGCTAGCAAGGATGAAGTGCCATCAACTCAGTCACCTGTTTCTGGGGAATTATCTAGAAAAAGACCTGTTCCCCAAGATAATGAACAATTGGCCAATGGTCATGAGGCCATCTCTAAGCGTATACGTTCTGGTCCTGACCCTTACTTGACTTTATCAGCTCAAATAAATGAATCTGGGAAGGATCTTAACTCTGTTAACGGAGTATCACCTAATGTTCCAGTACTGGATAGTGATCTAAATGCTGTGGAGCAAATGATTGCTGTGATTGGTGCTTTGCTTGCTGAAGGAGAAAGGGGTGCTGAATCTCTTGAAATCCTCATTTCAAATATTCACCCTGATCTGTTGGCTGATATTGTCATAACTAATATGAAGCACTTGCCTAAGACACCCCCACCACTAGCAAGGCTTGGGAATCCCCCAGTAACTCAACAAGTAGGTTCCCAAGTCAGTCAATCACAGGTTATAGCAGCATCTGCTCCAATAAGTTCTGTGCAATCCTTAGCTGTTACTGACCAAGCATCATTCCCTTCAACTACGGCCACTACTGCTACTTCATCATCATTTGACACCTCTAACTTCAGTAATCAGCCTGCTGATTCTAAACGTGATCCACGTCGGGATCCCCGTCGCCTGGATCCACGGCGTGGAGCGATATCTCCTGGAGGAGTAGCTGCCTCAACTACAGATGATACTGGGGCCACAAAATTGGAGGTTGATGATCCTGTGTCTTCTAATACTCCTGTTTCACATCCTGTAGCAAGCACTAATGACAATACTCCGTCAGATCTAACAATGAAAATAAAAAATGATGATATGGTCTCTGAAGGCCCCCCAGTTTCAGCACCTGATGGGATAACTCCCAAAACAGAGGTTGTTGAAAGGCCTGGAGAAGTTCACCAGAATATGGAAGAAAATGCTTTTTTGGATCCTTCAATCCCCCTCTCTGATTTAAGAGATGAGGATATCAGTACAGAAAAGCTGTCAGATGATACTGGAACAAATGGTCCAGATTCACCATCTATGTTAGAGTTTGATGAGTTTTCTCCTGATGTTCAAGTTGCATCTACATCAGAAGATACCTGTCTGGAGTTACCGCAGCTTCCACCATATGTTCAACAATCCAAAGAACAGGAAAGTAAGGTGAAACACATGGCTATTATGCATATAATTGAGTCATACAAGCATTTACACGGAACAGATTGTCAGCAGTTTTGCATGCCACTGCTTGCTCGATTAGTAGCTCAGATTGATGATGATAATGAGATTATTGTGATGCTGCAAAAACACATCCTGGAGGACCAATGGCAAAAGGGACATGAACTTGTACTCCATGTTCTATACCATCTGCACTCCCTCATTATATTGGATTCAGATGGGAAATCTTCATCTTCTGCTGTTTTATATGAGAACTTTCTCTTGGGGGTGGCCAAAGCTCTGTTGGAATATTTTCCAGCTTCAGACAAGTCTTTTAGTAGACTTCTTGGTGAAGCCCCATTTTTGCCTGAATCCACCTTGAAGATTTTGAATGATCTCTGCTATTCTGATGTAATTGATCATGATGGAAGAATTAGCCGTGACATTGAACGTGTAACTCAAGGTCTTGGTGCTATCTGGGGTTTAATTTTGGGGCGTCCACAAAATCGCCAAGCCTGCTTAGAAATAGCATTGAAGTGTGCTGTCCACCCACAGGATGAGATTCGGGCAAAAGCTATTCGGCTGGTGACAAACAAGCTCTTTCAGCTTAGTTACATATCAGAAGATGTTGAGAAATTTGCAACAAAAATGCTTCTTTCTGCTGTAGACCGTGAAGTTTTAGATGCAGTGCAATCGAGACCTGCTGAACCAAGAGCCGAGGCACAGGTTGAAAGTCATGAAGTAAGTAGCACTTCACAGGTTTCAGAGCCCACAATTTCTGAAAATGACTCTGCTAGAGTTGCTAAACCAATGATTCAAAGTCCATCTATATCATTTTCTGAAGCTCAACGCTTCATTTCTCTGTTTTTTGCTTTGTGTACAAAGAAACCGATTCTTCTACAGATTGTGTTTGATGTCTATGGGAAGGCCCCAAGAACTGTAAAGCAGGCTTTCCATCGCCACATTCCTATTCTTGTGAGGGCATTAGGGCAATCTTATTCTGAATTGCTCCCCATCATATCTGATCCACCAGAAGGAAGTGAAAATCTTCTGACACTGGTGCTGCAAATATTGACTCAAGACACAACACCATCTTCTGATCTGATATCTACTGTTAAACATTTATATGAAACTAAATTTAAAGATGTTACAATTCTTGTTCCATTATTGTCATCGCTTTCCAAAAAGGAGGTGTTACCCATATTCCCTCGGCTTGTTGACCTCCCATTGGAGAAGTTTCAAAGGGCGCTTGCTCACATACTACAGGGTTCAGCTCATACAGGTCCAGCTTTAACTCCTGTAGAGGTGTTGGTTGCGATCCATGGAATTGTTCCCGAGAAAGATGGCCTTGCACTAAAAAAGATAACAGATGCTTGCTCAGCTTGTTTTGAGCAACGTACAGTGTTCACACAGCAGGTTCTGGCCAAGGCACTGAACCAGATGGTTGATCAAACTCCATTGCCTCTGCTTTTCATGAGAACAGTTATTCAGTCAATCGATGCTTTTCCTGCACTGGTTGATTTTGTTATGGAGATACTCTCAAAACTTGTGACCAAACAGGTGTGGCGTATGCCAAAACTTTGGGTTGGTTTCTTAAAATGTGTATATCAGACACAGCCACGTTCTTTTCATGTATTATTGCAGTTGCCACCTCAACAACTAGAAAGCGCACTCAACAAGCATGCCAATCTCAGAGCCCCTCTGGCTTCTTACGCCAGTCAACCAACTGTAAAATCTTCACTTACTAGATCCACCTTAGCAGTTCTTGGTCTCGCAAATGAAACTCATGTGCAGCAACATTTGTCAACTTCATTACACCCTTCTGAGGCAAGTTCTTCAGTTAGTGGGGCAACTCTGACATGA 4020 0.4303 MAAPPPTKDQVLSLLAAANNHGDLSVKTSSLKQAKDLLLSLDPSLAADLYPYLLELQSSPESLVRKLLIQIIEEIGFKAAEDSPKLISVLLTFLRDSDVEVVKQSIVSGSNIFCSGFEELVVQFQQCGKVERWLEEIWMWMHRFKDAVFGIALEPGAVGIKLLALKFLETFILLFTSDNSNPDKPATEGVRKAVNISWLVGGHPVLDPVVLMSEANRTLGTLLNLLQSAGSLPGCLTITVVNCLAAIARKRPQHYDTILSAMLDFNPNFQTVKGCHVASIQYSLRTTFLGFLRCTYSPILESRERLIRSLRGMNAGDAADQVIRQVDKMIKNGDRSTRDARASKDEVPSTQSPVSGELSRKRPVPQDNEQLANGHEAISKRIRSGPDPYLTLSAQINESGKDLNSVNGVSPNVPVLDSDLNAVEQMIAVIGALLAEGERGAESLEILISNIHPDLLADIVITNMKHLPKTPPPLARLGNPPVTQQVGSQVSQSQVIAASAPISSVQSLAVTDQASFPSTTATTATSSSFDTSNFSNQPADSKRDPRRDPRRLDPRRGAISPGGVAASTTDDTGATKLEVDDPVSSNTPVSHPVASTNDNTPSDLTMKIKNDDMVSEGPPVSAPDGITPKTEVVERPGEVHQNMEENAFLDPSIPLSDLRDEDISTEKLSDDTGTNGPDSPSMLEFDEFSPDVQVASTSEDTCLELPQLPPYVQQSKEQESKVKHMAIMHIIESYKHLHGTDCQQFCMPLLARLVAQIDDDNEIIVMLQKHILEDQWQKGHELVLHVLYHLHSLIILDSDGKSSSSAVLYENFLLGVAKALLEYFPASDKSFSRLLGEAPFLPESTLKILNDLCYSDVIDHDGRISRDIERVTQGLGAIWGLILGRPQNRQACLEIALKCAVHPQDEIRAKAIRLVTNKLFQLSYISEDVEKFATKMLLSAVDREVLDAVQSRPAEPRAEAQVESHEVSSTSQVSEPTISENDSARVAKPMIQSPSISFSEAQRFISLFFALCTKKPILLQIVFDVYGKAPRTVKQAFHRHIPILVRALGQSYSELLPIISDPPEGSENLLTLVLQILTQDTTPSSDLISTVKHLYETKFKDVTILVPLLSSLSKKEVLPIFPRLVDLPLEKFQRALAHILQGSAHTGPALTPVEVLVAIHGIVPEKDGLALKKITDACSACFEQRTVFTQQVLAKALNQMVDQTPLPLLFMRTVIQSIDAFPALVDFVMEILSKLVTKQVWRMPKLWVGFLKCVYQTQPRSFHVLLQLPPQQLESALNKHANLRAPLASYASQPTVKSSLTRSTLAVLGLANETHVQQHLSTSLHPSEASSSVSGATLT* 1340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3647 1339 MobiDBLite consensus disorder prediction 519 629 - -
Lja1g3647 1339 PANTHER SYMPLEKIN-RELATED 19 1339 - -
Lja1g3647 1339 Pfam Symplekin/PTA1 N-terminal 98 320 IPR032460 -
Lja1g3647 1339 PANTHER SYMPLEKIN-RELATED 19 1339 - -
Lja1g3647 1339 MobiDBLite consensus disorder prediction 330 386 - -
Lja1g3647 1339 MobiDBLite consensus disorder prediction 540 555 - -
Lja1g3647 1339 MobiDBLite consensus disorder prediction 952 979 - -
Lja1g3647 1339 MobiDBLite consensus disorder prediction 565 606 - -
Lja1g3647 1339 MobiDBLite consensus disorder prediction 1319 1339 - -
Lja1g3647 1339 MobiDBLite consensus disorder prediction 963 979 - -
Lja1g3647 1339 MobiDBLite consensus disorder prediction 519 539 - -
Lja1g3647 1339 Gene3D - 4 346 IPR011989 -
Lja1g3647 1339 MobiDBLite consensus disorder prediction 665 685 - -
Lja1g3647 1339 SUPERFAMILY ARM repeat 9 1277 IPR016024 -
Lja1g3647 1339 Pfam Symplekin tight junction protein C terminal 1101 1279 IPR022075 -
Lja1g3647 1339 MobiDBLite consensus disorder prediction 330 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3647 Lja-Chr1 45407970 45429792 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3647 K06100 - gmx:100789876 2069.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3647 1 45407970 45429792 Lja1g3647 1 45407970 45429792 ECH