Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3644 ATGGCTGTTTCAACCACTTTTCCAGGTGCTAAATTGGAGTCTCTATTGCACAATTGCTCTTCCTCTTCAAGGGCATCACCTTCCACTGTCACCCAATTATCATTTCCCGGCGGAAAACCGAGAAGGAATCTCATCCATAAAGGGGTTGTTCGCTGCGATGCTCAGGCTTCTGATGTGGTGGTTAAGACCGATGGTTCGAGTAATGCAACCGCACTCTCTGCTCTTGAGCAGCTCAAGGCTTCTGCTGCTGATAGGTACACAAAGGAAAGGAGCAGCATTGTTGTCATTGGGCTCAGTGTGCACACTGCACCTGTAGAAATGCGTGAAAAACTTGCCATTCCAGAAGCAGAATGGCCTAGAGCTATTGGAGAGCTGTGCAGTCTTAATCATATTGAAGAAGCAGCTGTTCTTAGCACCTGCAATCGAATGGAGATATATGTTGTTGCTCTTTCCCAACACCGCGGGGTCAAAGAGGTCATGGAATGGATGTCTAAAACAAGTTCCGTCCCTGTTTCAGAGCTTTGCAAGCACCGATTTTTACTTTACAACAAAGATGCGACACAGCATATTTTTGAAGTATCAGCAGGTCTTGACTCTCTTGTATTGGGAGAAGGTCAAATCCTTGCTCAGGTTAAGCAAGTTGTTAAAGTTGGACAAGGAGTTACTGGCTTTGGGAGAAACATTAGTGGGCTATTCAAGCATGCAATTACTGTCGGGAAAAGGGTTAGAGCTGAGACTAATATTGCTGCTGGGGCAGTTTCTGTAAGCTCAGCTGCTGTTGAATTGGCCTTTATGAAGCTACCTGGAACCTCCCATGATGCCAGAATGTTGGTTATTGGTGCTGGCAAGATGGGAAAGTTAGTGATCAAACACTTGGTGGCAAAAGGTTGCACAAAGATGGTTGTCGTGAACAGAACTGAGGAGAGAGTTGCTGCAATACGTGAAGAACTGAAGGATGTTGAGATAATTTACAAACCCCTTTCAGAAATGCTTACCTGTGTTGGTGAAGCAGATGTAGTTTTCACGAGTACAGCATCAGAAACCCCGTTATTCATGAAAGATCACGTGAAGGACCTTCCTCCTGCAAGTCAAGATGTTGGCGGCCAACGTATTTTCATTGATATCTCTGTTCCTCGGAATGTGGATTCATGTGTCTCAGATCTTGATTCTGTGCGAGTTTACAATGTTGATGACCTTAAAGAGGTTGTTGCTGCCAATAAAGAGGATAGGCTAAGAAAAGCTATGGAAGCACAGACAATCATTGCTGAAGAATCTAAACAGTTCGAAGCCTGGAGGGACTCGCTGGAAACTGTTCCTACTATCAAGAAATTGAGGGCTTATGCTGAAAGAATCAGGGTTGCTGAGCTTGATAAGTGCTTAGGTAAGATGGGTGAGGATATCTCAAAGAAGATGCGGAGAGCTGTGGATGATCTTAGTCGGGGTATGGTGAATAGGTTGCTTCATGGTCCAATGCAGCATTTAAGGTGTGATGGGAGTGACAGCCGGACTCTAAATGAGACTCTTGAGAACATGCATGCTTTGAATAGAATGTTCAGCCTTGAGACTGAAATATCTGTTTTGGAGCAGAAGATTCGAGCAAAGGTGGAGCAAAACCAGAAGTGA 1623 0.4467 MAVSTTFPGAKLESLLHNCSSSSRASPSTVTQLSFPGGKPRRNLIHKGVVRCDAQASDVVVKTDGSSNATALSALEQLKASAADRYTKERSSIVVIGLSVHTAPVEMREKLAIPEAEWPRAIGELCSLNHIEEAAVLSTCNRMEIYVVALSQHRGVKEVMEWMSKTSSVPVSELCKHRFLLYNKDATQHIFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVTGFGRNISGLFKHAITVGKRVRAETNIAAGAVSVSSAAVELAFMKLPGTSHDARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRTEERVAAIREELKDVEIIYKPLSEMLTCVGEADVVFTSTASETPLFMKDHVKDLPPASQDVGGQRIFIDISVPRNVDSCVSDLDSVRVYNVDDLKEVVAANKEDRLRKAMEAQTIIAEESKQFEAWRDSLETVPTIKKLRAYAERIRVAELDKCLGKMGEDISKKMRRAVDDLSRGMVNRLLHGPMQHLRCDGSDSRTLNETLENMHALNRMFSLETEISVLEQKIRAKVEQNQK* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3644 540 SUPERFAMILY Glutamyl tRNA-reductase catalytic, N-terminal domain 92 248 IPR036343 GO:0008883|GO:0033014|GO:0050661
Lja1g3644 540 Pfam Shikimate / quinate 5-dehydrogenase 262 402 IPR006151 -
Lja1g3644 540 Pfam Glutamyl-tRNAGlu reductase, N-terminal domain 96 246 IPR015895 GO:0008883|GO:0033014|GO:0050661
Lja1g3644 540 Coils Coil 303 323 - -
Lja1g3644 540 TIGRFAM hemA: glutamyl-tRNA reductase 93 500 IPR000343 GO:0008883|GO:0033014|GO:0050661
Lja1g3644 540 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 251 410 IPR036291 -
Lja1g3644 540 Pfam Glutamyl-tRNAGlu reductase, dimerisation domain 416 520 IPR015896 GO:0008883|GO:0033014|GO:0050661
Lja1g3644 540 SUPERFAMILY Glutamyl tRNA-reductase dimerization domain 414 514 IPR036453 GO:0008883|GO:0033014|GO:0050661
Lja1g3644 540 PANTHER GLUTAMYL-TRNA REDUCTASE 1 540 - -
Lja1g3644 540 CDD NAD_bind_Glutamyl_tRNA_reduct 93 414 - -
Lja1g3644 540 Gene3D - 252 403 - -
Lja1g3644 540 Hamap Glutamyl-tRNA reductase [hemA]. 92 518 IPR000343 GO:0008883|GO:0033014|GO:0050661
Lja1g3644 540 Gene3D - 91 251 IPR036343 GO:0008883|GO:0033014|GO:0050661
Lja1g3644 540 ProSitePatterns Glutamyl-tRNA reductase signature. 189 212 IPR018214 GO:0008883
Lja1g3644 540 PANTHER GLUTAMYL-TRNA REDUCTASE 1, CHLOROPLASTIC 1 540 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3644 Lja-Chr1 45301758 45304978 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3644 K02492 - gmx:100782247 879.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3644 1 45301758 45304978 Lja1g3644 1 45301758 45304978 ECH