Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3643 ATGGGTACGGGTTGGAGAAGAGCTTTTTGCACTCGAGACCCTGAATCCACCCTATCAGATAAGCAACATAGTAGCCACAGTCCAAGTCCAAGCCCACGAAGCTGCGCTCGATTGAACTTCTTCTCCGGAGGTAGCAACCCCTCCACTCCACGGTTGCAGCAGCAACAATCTCAACCGGTCAACAGTCCAAGCTTGCGTTGCAGAACACTCGCAGAAGCAGCAGCAACTGTTAATGAAAGCCCCAGATTTCAAAGCAAAACCACTCCCAGAGCCACCAAGTCCCCCAAAACTGTTGCAGCCTCAAATCCAAATTCTCCTCGCTCACCTCTCAAGTTGTCCTTGTTCAAAAACAGTTTCAAATTCAGGAGTAGCTGTGGAATCTGCTTGAACAGCGTGAAAACTGGACAAGGCACTGCAATTTACACAGCAGAATGCTCACATGCTTTCCATTTCCCGTGTATTGCTGCACATGTACGCAAGCGTGGTAGCTTGATTTGTCCCGTCTGCAACGCTGTCTGGAAAGATGTGCCTCTGCTGGCTGCGCACAAGAATCTCGGCCCTGAATCCACCGCCCAGAACGACGTCGCCGCCGATAAGCCCAATGCCAGTGAGAAAAAGCGAGCAGAAAGCCCCTCACCGGTGTTTCAAACCAAGAATCTGGATCCACCTCAACAGCAACCGCAATCACAAGCAAAGCATTCCGATTCAGTCAGAGCCTACGACGATGATGAGCCTCTCCTTTCTCCCATCGCCGGCGGACGGATCATCCCCATTCCCGAAGCCGATGAGAATGCAGAAGATGAGGAAGATGACGACGTCGGCGAGTTCCAAGGCTTCTTCGTAACCGCAAAGCCTTCATCCTCAGTCAAATCCTACTCCGATGATGTTCAAGCCAGCGACGGTGATTCCAGAACTGTTCAGGTGAAGCTGATGCCGGAGTGTGCAGTAGTATCAGTTTCCCGGAGCCACGAGACTTACGCTTTAGTTTTAAAAGTGAAAGCTCCTCCGGCGAGGAGCGCCGCCAGCAGCGCCACCAATCTGGACTCTCCACACCGCGCACCGATAGATCTCGTAACGGTGCTCGATCTCGGTGGAAGTATGACAGGAGCAAAGCTTCACATGCTGAAGCGCGCGATGCGTTTGGTGATTTCCTCACTCGGCTCCGCTGACAGGCTCTCCATCGTGGCATTCTCCGCCACCTCCAAACGCCTCTTCCCGCTGCGGAGAATGACGGCCAACGGCCAACGCCTGGCTCGCCGCATCGTTGACCGCCTCGTTACCGGTCAAGGAACCGCCGTGAGTGATGCATTGAAGAAAGCCACGAAGGTTCTAGAGGATCGCCGGGAGAGAAACCCGGTGGCCAGCGTCATGCTCCTATCCGACGGCCAGGATGAAAGAGTTCAAAACAACAGCAACAAATCAAGTAATCAACGGAAGACATGGAGCCACGTGTCCTCCACCTCAACGCGATTCGCGCACATCGAGATTCCGGTTCACGCGTTTGGATTTGGGGCCAAAAGCGGTTACAGTAACGACCCGGGTGAAGATGCGTTTGCGAAATGCGTGGGTGGGCTTTTGAGTGTTGTGGTTCAAGACTTGAGGATTCAACTGGGCTTTCAATCTGATTCGGGCCGGGCCGAGATCAGTGCTATTTACACATGCAGTGGCAGGCCCACGCTGCTTAGTTCCGGCGCGGTGAGGCTCGGCGATTTATACGCCGAGGAAGAGAGGGAGTTGTTAGTTGAGCTGAGGGTTCCGTCGTGGGGGGTTGGGTCCCACCATGTGATGACGGTTAGGTGCCTCTACAAGGATCCTGGTAGCCAGGAGATTGTGTACGGTAAGGAACAGGGGCTTGTGGTGCCCTCTCCACAGAGCTTGCGTTCAGGCACAAGAATCGAGAGGCTGAGCAATCTTTTCATAACGACTCGAGCCGTAGCCGAGTCGAGGAGGGTGTTGGAGCAGAACGCTGACTTCACCAGCGCTCATCATTTGCTGGCTTCGGCTCGAGCTCTTTTGGTTCAGTCCGGCTCGGCTTCGGCTGCGGAGTATGTTCGTGGCTTGGAGGCTGAGCTCGCGGAGGTTCATTGGCGGAGGCAGCAAGTGGAGCAGGTTCAGGTTCAGATTCAGCAACAACAACAGCAACGGAGAAGAGGGAGCGATAGGGAGGTGATGAGCTTGGTGGATGAAAATGGTGAGCCACTGACTCCCACATCAGCTTGGAGAGCGGCGGAGAAGCTGGCTAAGATGGCGATGATTAAGAAGTCTTTGAATAGGGTCAGTGACTTACACGGCTTTGAAAATGCTAGGTTTTAA 2313 0.5391 MGTGWRRAFCTRDPESTLSDKQHSSHSPSPSPRSCARLNFFSGGSNPSTPRLQQQQSQPVNSPSLRCRTLAEAAATVNESPRFQSKTTPRATKSPKTVAASNPNSPRSPLKLSLFKNSFKFRSSCGICLNSVKTGQGTAIYTAECSHAFHFPCIAAHVRKRGSLICPVCNAVWKDVPLLAAHKNLGPESTAQNDVAADKPNASEKKRAESPSPVFQTKNLDPPQQQPQSQAKHSDSVRAYDDDEPLLSPIAGGRIIPIPEADENAEDEEDDDVGEFQGFFVTAKPSSSVKSYSDDVQASDGDSRTVQVKLMPECAVVSVSRSHETYALVLKVKAPPARSAASSATNLDSPHRAPIDLVTVLDLGGSMTGAKLHMLKRAMRLVISSLGSADRLSIVAFSATSKRLFPLRRMTANGQRLARRIVDRLVTGQGTAVSDALKKATKVLEDRRERNPVASVMLLSDGQDERVQNNSNKSSNQRKTWSHVSSTSTRFAHIEIPVHAFGFGAKSGYSNDPGEDAFAKCVGGLLSVVVQDLRIQLGFQSDSGRAEISAIYTCSGRPTLLSSGAVRLGDLYAEEERELLVELRVPSWGVGSHHVMTVRCLYKDPGSQEIVYGKEQGLVVPSPQSLRSGTRIERLSNLFITTRAVAESRRVLEQNADFTSAHHLLASARALLVQSGSASAAEYVRGLEAELAEVHWRRQQVEQVQVQIQQQQQQRRRGSDREVMSLVDENGEPLTPTSAWRAAEKLAKMAMIKKSLNRVSDLHGFENARF* 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3643 770 MobiDBLite consensus disorder prediction 210 234 - -
Lja1g3643 770 CDD vWA_C3HC4_type 355 530 - -
Lja1g3643 770 Gene3D von Willebrand factor, type A domain 356 524 IPR036465 -
Lja1g3643 770 PANTHER CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR 3 770 - -
Lja1g3643 770 MobiDBLite consensus disorder prediction 1 106 - -
Lja1g3643 770 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 118 220 IPR013083 -
Lja1g3643 770 ProSiteProfiles Zinc finger RING-type profile. 125 170 IPR001841 -
Lja1g3643 770 CDD RING-H2 125 170 - -
Lja1g3643 770 ProSiteProfiles VWFA domain profile. 356 504 IPR002035 -
Lja1g3643 770 PANTHER E3 UBIQUITIN-PROTEIN LIGASE WAV3 3 770 - -
Lja1g3643 770 MobiDBLite consensus disorder prediction 189 256 - -
Lja1g3643 770 MobiDBLite consensus disorder prediction 21 65 - -
Lja1g3643 770 MobiDBLite consensus disorder prediction 461 482 - -
Lja1g3643 770 Pfam RING-like zinc finger 125 154 IPR001841 -
Lja1g3643 770 MobiDBLite consensus disorder prediction 78 106 - -
Lja1g3643 770 Pfam von Willebrand factor type A domain 356 503 IPR002035 -
Lja1g3643 770 SMART VWA_4 354 543 IPR002035 -
Lja1g3643 770 MobiDBLite consensus disorder prediction 462 482 - -
Lja1g3643 770 SUPERFAMILY RING/U-box 119 175 - -
Lja1g3643 770 SUPERFAMILY vWA-like 354 534 IPR036465 -
Lja1g3643 770 SMART ring_2 125 169 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3643 Lja-Chr1 45289965 45293142 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3643 - - lja:Lj3g3v3131860.1 1407.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3643 1 45289965 45293142 Lja1g3643 1 45289965 45293142 ECH