Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3614 ATGGTATTCTCGAACAAGAACATGTTCAAGTTAAGGTTTCCATGCTTACCTCGTCCCACTCCCAAATCACCACCACCTATTGACATTGTGCACAACGCAAAAAAACATGACGAGCTCAAAGAAGTTTTTGATTACTTGGATGTTGACAAAGATGGCAAAATTTCAAGCAAGGAACTAATGGATTACTTTGCTTCTGTTGGGGAATCCATGAATCACAAAGTGGCCAAGAGTGTGATTGTACAGTTTGATTCTGATGGTGATGAATTGCTTGATTTTGGGGACTTTGCGAGGCTCATGAAGCAAGAGGATAGTGGTGAGTTGGAAGATGTTCTGAAAAGTGCGTTTGAGATGTTTGAGGTTGAGAAAGGGTGTGGTTGCATTACGCCCAAAGGATTGCAGAGGATGTTGAGACAGTTAGGAGATGTTAAATCTCAGGATGACTGTGCTGCCATGATTCGTGCCTTCGATCTTGATGGCAATGGATTCCTTGATTTTCACGAATTTCAGCGGATGATGTCCCCTACTGCTTAG 531 0.4256 MVFSNKNMFKLRFPCLPRPTPKSPPPIDIVHNAKKHDELKEVFDYLDVDKDGKISSKELMDYFASVGESMNHKVAKSVIVQFDSDGDELLDFGDFARLMKQEDSGELEDVLKSAFEMFEVEKGCGCITPKGLQRMLRQLGDVKSQDDCAAMIRAFDLDGNGFLDFHEFQRMMSPTA* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3614 176 ProSiteProfiles EF-hand calcium-binding domain profile. 143 176 IPR002048 GO:0005509
Lja1g3614 176 ProSitePatterns EF-hand calcium-binding domain. 47 59 IPR018247 -
Lja1g3614 176 SUPERFAMILY EF-hand 24 172 IPR011992 -
Lja1g3614 176 Gene3D - 29 103 - -
Lja1g3614 176 ProSiteProfiles EF-hand calcium-binding domain profile. 34 69 IPR002048 GO:0005509
Lja1g3614 176 ProSiteProfiles EF-hand calcium-binding domain profile. 70 105 IPR002048 GO:0005509
Lja1g3614 176 ProSitePatterns EF-hand calcium-binding domain. 156 168 IPR018247 -
Lja1g3614 176 SMART efh_1 147 175 IPR002048 GO:0005509
Lja1g3614 176 SMART efh_1 74 102 IPR002048 GO:0005509
Lja1g3614 176 SMART efh_1 38 66 IPR002048 GO:0005509
Lja1g3614 176 PANTHER CALMODULIN 17 173 - -
Lja1g3614 176 Pfam EF hand 148 173 IPR002048 GO:0005509
Lja1g3614 176 PANTHER CALCIUM BINDING PROTEIN 17 173 - -
Lja1g3614 176 Pfam EF-hand domain pair 38 100 IPR002048 GO:0005509
Lja1g3614 176 Gene3D - 104 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3614 Lja-Chr1 44840630 44841348 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3614 14 173 EF-hand Containing Proteins AT3G50770 48.485 5.81e-49 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3614 K13448 - gmx:100775336 258.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3614 1 44840630 44841348 Lja1g3614 1 44840630 44841348 ECH