Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3610 ATGCTTGTTGAAGCAGCAATGGAAAGTTCCGTCAATGGTGGTGGTGCCTTCTCCCAGTTACACCAGAGCTGCGGAGATAGCAGCGAGGAGGAGCTTTCCGTCCTCCCTCGCCACACCAAGGTGGTTGTTACCGGCAATAACCGTACCAAATCGGTCCTCGTTGGTCTCCAAGGAGTCGTTAAGAAAGCCGTTGGACTCGGTGGTTGGCATTGGCTGGTTCTTACGAATGGAATTGAAGTGAAGCTGCAGAGGAATGCTCTTAGTGTGATTGAAGCACCCACTGGCAATGAGGAAGATGATGATCTTGAATTTGAAAATGTGCAATGGAATGGATCAGATATGGCATCGGACGACACACAGAAGACCCATAAATCGAGGCACAGAATGAATAGATCATTGGGATCATCTCACAAGACCATGAGTAGGTCCTTCTCTGGTGATTCACAGTCTAAGGGGTCCGTTACTATGACTCATGGGTCCATGAAGGTTGACTTGAGCAAACTTGAAATGGCTGCTTTGTGGAGATATTGGCGACATTTTAATCTAGTGGATGCCATCCCAAATCCATCAAAAGAGCAGCTAGTAGACGGTGTTCAGAGGCATTTCATGTCTCAGCAAATCGACGAGTTGCAGGTCATCATGGGGTTTGTCCAAGCTGCAAAGAGGCTCAAGAGTACGACTGTATGCAAATGA 693 0.4762 MLVEAAMESSVNGGGAFSQLHQSCGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVGLGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEEDDDLEFENVQWNGSDMASDDTQKTHKSRHRMNRSLGSSHKTMSRSFSGDSQSKGSVTMTHGSMKVDLSKLEMAALWRYWRHFNLVDAIPNPSKEQLVDGVQRHFMSQQIDELQVIMGFVQAAKRLKSTTVCK* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3610 230 Gene3D - 143 230 IPR038291 -
Lja1g3610 230 MobiDBLite consensus disorder prediction 111 155 - -
Lja1g3610 230 Pfam Sin3 binding region of histone deacetylase complex subunit SAP30 168 221 IPR025718 GO:0005515
Lja1g3610 230 PANTHER SAP30 5 230 IPR024145 -
Lja1g3610 230 PANTHER HISTONE DEACETYLASE COMPLEX SUBUNIT SAP30 SIN3-BINDING PROTEIN 5 230 - -
Lja1g3610 230 MobiDBLite consensus disorder prediction 134 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3610 Lja-Chr1 44797177 44800680 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3610 - - gmx:100809195 400.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3610 1 44797177 44800680 Lja1g3610 1 44797177 44800680 ECH