Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3598 ATGGCGGCAAAGGTGGTGTGCTGCGACACACAGTTCTGGTTGTACCTGGTGGTGATTGTGGGGTTGGTTTGCTTCTCAGGCCTAATGGCTGGTCTCACCCTTGGACTCATGTCTCTTGGCCTCGTCGACCTTGAAGTTCTCATCAAATCCGGTCGCCCTCAAGATCGCATCCATGCTTCCAAAATTTTCCCTGTAGTTAAGAATCAGCATCTTTTGCTTTGCACTCTGTTAATTGCAAACTCCTTAGCCTTAGAGGCTCTTCCTATTTTCCTTGATTCTATTGTTCCTTCCTGGGCAGCTGTCTTGATGTCGGTCACCCTCATCCTCGTCTTTGGAGAGATAATGCCTCAAGCACTCTGTACTCGATATGGGTTGATTGTTGGAGCGAAACTAGCTCCGCTTGTTCGTGTTCTTCTTGTAGTTTTCTACCCCCTCGCTTACCCCATCAGCAAGGTTCTTGATTGGATGTTGGGTAAAGGACAGGCTGCTCTTTTAAAGAGGGCTGAGCTCAAGACTTTTGTAAATTTTCATGGGAACGAGGCTGGGAAAGGAGGTGACTTGACACATGATGAGACAACCATCATAGCTGGTGCTCTTGAGTTGACTGAGAAAACTGCTAAAGATGCTATGACTCCCATATCAAAGGCATTTTCCCTTGATCTGGATGCAACTCTTAATTTGGAGACCTTGAACTCAATAATGACGATGGGTCATAGTAGAGTTCCAGTTTATGCAGGGGAGAAAGCAAATATAATCGGGCTTGTTCTGGTTAAAAATCTCTTCATGGTTGATTCAAAAGCTGCAGTTCCTCTAAGAAAAATGATCATCAGAAAAATTCCTCGTGTTTCAGAGAACATGCCTCTGTATGATATACTCAATGAATTTCAGAAGGGTCACAGTCATATTGCAGTTGTGTATAGTGATGTAAATGAGAATAAAGAAGCACCTGTAAAAATTAAAGAAGGTGAACAACTTGATTTTAAGGACAGCTGTAAGAACGGAAAAAACACACCCTTGGGTAAAGGTGCTGAATTGGAGTCACACGATACTGCTAGTTGTAAGACCGACAGCATTTCACAGGTCAAAAAGAGTCCACCAGCAACTCCTGCTTTTAAAAAGCGACATAGAGGCTGTTCTTATTGCATCATGGACATAGATAATTCCCCCCTGCCAGTTTTTCCACCCAATGAAGTGGTGGTTGGTGTTATTACAATGGAGGATGTCATCGAAGAGCTTCTTCAGGAGGAGATACTAGATGAAACTGATGAATATGTCAATATTCATAACAAGATAAAAGTTAACATGAATGCTTCTAAGGAAAAGGCTCCTGATGCAAATTTGTCGAAGCCTTCAAGTTTAGAAGTTCAAGGACACACACCAACTAATTCGATTTCTACAGCTACTTCTGTAACGGGCTCACCAACAACAATTGATCAAATTTCTGAAAGTGAGTCCCTAAGGAATTAG 1467 0.4254 MAAKVVCCDTQFWLYLVVIVGLVCFSGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRIHASKIFPVVKNQHLLLCTLLIANSLALEALPIFLDSIVPSWAAVLMSVTLILVFGEIMPQALCTRYGLIVGAKLAPLVRVLLVVFYPLAYPISKVLDWMLGKGQAALLKRAELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLNLETLNSIMTMGHSRVPVYAGEKANIIGLVLVKNLFMVDSKAAVPLRKMIIRKIPRVSENMPLYDILNEFQKGHSHIAVVYSDVNENKEAPVKIKEGEQLDFKDSCKNGKNTPLGKGAELESHDTASCKTDSISQVKKSPPATPAFKKRHRGCSYCIMDIDNSPLPVFPPNEVVVGVITMEDVIEELLQEEILDETDEYVNIHNKIKVNMNASKEKAPDANLSKPSSLEVQGHTPTNSISTATSVTGSPTTIDQISESESLRN* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3598 488 MobiDBLite consensus disorder prediction 449 488 - -
Lja1g3598 488 PANTHER DOMAIN-CONTAINING PROTEIN, PUTATIVE, EXPRESSED-RELATED 2 474 - -
Lja1g3598 488 Pfam Cyclin M transmembrane N-terminal domain 18 189 IPR002550 -
Lja1g3598 488 CDD CBS_pair_CorC_HlyC_assoc 205 311 IPR044751 -
Lja1g3598 488 Gene3D - 345 420 IPR046342 -
Lja1g3598 488 Gene3D - 189 322 IPR046342 -
Lja1g3598 488 MobiDBLite consensus disorder prediction 439 488 - -
Lja1g3598 488 PANTHER ANCIENT CONSERVED DOMAIN PROTEIN-RELATED 2 474 IPR045095 GO:0010960
Lja1g3598 488 ProSiteProfiles CNNM transmembrane domain profile. 8 191 IPR002550 -
Lja1g3598 488 SUPERFAMILY CBS-domain pair 197 310 IPR046342 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3598 Lja-Chr1 44700976 44705766 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3598 K16302 - gmx:100804572 805.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3598 1 44700976 44705766 Lja1g3598 1 44700976 44705766 ECH