Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3582 ATGGGAACCCTCGGAAGAGCGATATACAGTGTTGGATTCTGGATTCGAGAGACCGGTCAAGCCATTGATCGCCTCGGTTCTCGCCTCCAGGGTGGCTACTTCATCCAAGAGCAGCTGTCGAGGCATCGGACTCTGATGAACATATTTGATAAGGCTCCTACTGTTGATAAGGATGTATTTGTTGCACCAAGTGCCTCTGTCATTGGAGATGTTCAAGTTGGAAAAGGGTCATCGATTTGGTATGGAACTGTCTTGCGAGGTGATGTAAACAGTATTAGAGTTGGAAGTGGAACGAACATACAAGATAACTCCCTGGTTCATGTTGCAAAATCAAATTTAGGTGGGAAGGTGTTGCCCACTATTATTGGGAATAATGTTACTGTAGGTCATAGTGCTGTTTTACATGGTTGCACTGTTGAAGATGAGGCTTTTGTTGGTATGGGCGCAATTCTACTTGATGGTGTCGTTGTTGAGAAAAATGCCATGGTTGCTGCTGGAGCCCTTGTGAGACAGAATACAAAGGTTCCATCTGGCGAGGTATGGGCAGGCAATCCAGCAAAGTTCCTGAGAAAGCTCACTGATGAAGAGATAGCTTTTATCTCCCAGTCAGCCACCAATTATACCAACCTTGCACAAGTCCATGCAGCTGAAAATTCAAAATCGTTCGATGAAATTGAGTTTGAGAAGGTTCTGCGTAAGAAGTTTGCACGTAGAGATGAGGACTATGACTCTATGATTGGGGTTGTTCGTGAGATCCCACCAGAACTTATTCTTCCCGATAATGTCTTGCCTGATAAAGCAGACAAAGCCATCCAAAAATGA 822 0.4453 MGTLGRAIYSVGFWIRETGQAIDRLGSRLQGGYFIQEQLSRHRTLMNIFDKAPTVDKDVFVAPSASVIGDVQVGKGSSIWYGTVLRGDVNSIRVGSGTNIQDNSLVHVAKSNLGGKVLPTIIGNNVTVGHSAVLHGCTVEDEAFVGMGAILLDGVVVEKNAMVAAGALVRQNTKVPSGEVWAGNPAKFLRKLTDEEIAFISQSATNYTNLAQVHAAENSKSFDEIEFEKVLRKKFARRDEDYDSMIGVVREIPPELILPDNVLPDKADKAIQK* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3582 273 Gene3D Hexapeptide repeat proteins 43 223 - -
Lja1g3582 273 PANTHER DYNACTIN SUBUNIT P25 1 271 - -
Lja1g3582 273 CDD LbH_gamma_CA_like 54 212 - -
Lja1g3582 273 PANTHER GAMMA CARBONIC ANHYDRASE 1, MITOCHONDRIAL 1 271 - -
Lja1g3582 273 Pfam Hexapeptide repeat of succinyl-transferase 119 151 IPR001451 -
Lja1g3582 273 SUPERFAMILY Trimeric LpxA-like enzymes 47 213 IPR011004 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3582 Lja-Chr1 44579628 44583436 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3582 121 196 Miscellaneous Gene Families AT2G17640 35.294 1.55e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3582 K01726 - gmx:100777972 511.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3582 1 44579628 44583436 Lja1g3582 1 44579628 44583436 ECH