Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3576 ATGAAGTTCTTTCTGGTTTTCTTAGTTTTTTGTGTGACACTGAAGCAGGGGATTGCAGATGATGATGGTGGGTTTGTGAAAGCAAGAGGAGTGCAGTTGATGCTGAATGGGAGCCCTTACTATGCTAATGGCTTCAATGCTTATTGGTTAATGTATTTTGCCTCTGATCCTTCTCAGAGAAACAAGGTTTCTTCAGCTTTTCAAGAGGCTGCAGATCATGGACTTAACATTGGCAGAACTTGGGCTTTCAGTGATGGTGGATATAAACCCCTTCAATACTCTCCTGGGTCCTATAATGAGGAAATGTTCCAGGGGTTGGATTTCGTAGTAGCTGAAGCTGGAAAACATGGAATCAAGCTGATCTTGAGTTTGGTGAATAACTATGAGAATTTAGGAGGGAAGAAGCAGTACGTGGAGTGGGCAAGGAGTCAGGGCCAGTCCATAAATTCAGAAGATGATTTCTTCACAAATCCTGTTGTCAAGGGATACTACAAAAACCACATCAAGACTGTGCTTACAAGACATAACAGCCTCACTGGAGTTGCTTACAAGGATGATCCGACTATAATGGCTTGGGAGCTTATGAATGAGATTAGATGTCCTTCAGATCAATCAGGAAATTCGGTTCAGGGTTGGATTACTGAGATGGCATCATACTTGAAATCCATAGATGGCAACCACTTGCTTGAAGCTGGTCTAGAAGGTTTCTACGGGCAGTCAAAGGCAGAGTCTAACCCTAACTTCCAAGTTGGTACAGATTTTATTGCAAACAACCAAATCCCCGGCATTGATTTCGCAACACTACACTCCTACCCGGATCAATGGCTAACTAGTTCAAGTTATGAAGACCAAATGTCTTTCTTGAGTGGGTGGCTCAATGACCACATCCAAGATGCACAGAACATCCTTCACAAGCCACTTCTATTTGCTGAGTTTGGGATTTCCACAAAAAATTTGGGTACCAACACAACTCCAAGGGACAGGTTCTTCAACACAGTATATTCAGCAGTATATTCATCAGCAAGTGGTGGCGGAGCCGCTGTTGGCGGCTTATTTTGGCAACTTCTGGTTGAAGGAATGGACTCATTTCGTGATGGTTATGAAGTGGTCTTAGGTGAGAGCCCCTCAACAGCTGCCGTGATTGCTCAACAGTCTCAGAAACTCAACCGAATTCGCAAGATGTACGCCAGATTGAGAAACATTGAGAAGTGGAATAAAGCAAAGGAAATTAGAAGCTCACAAGGTGGAAAATGA 1254 0.433 MKFFLVFLVFCVTLKQGIADDDGGFVKARGVQLMLNGSPYYANGFNAYWLMYFASDPSQRNKVSSAFQEAADHGLNIGRTWAFSDGGYKPLQYSPGSYNEEMFQGLDFVVAEAGKHGIKLILSLVNNYENLGGKKQYVEWARSQGQSINSEDDFFTNPVVKGYYKNHIKTVLTRHNSLTGVAYKDDPTIMAWELMNEIRCPSDQSGNSVQGWITEMASYLKSIDGNHLLEAGLEGFYGQSKAESNPNFQVGTDFIANNQIPGIDFATLHSYPDQWLTSSSYEDQMSFLSGWLNDHIQDAQNILHKPLLFAEFGISTKNLGTNTTPRDRFFNTVYSAVYSSASGGGAAVGGLFWQLLVEGMDSFRDGYEVVLGESPSTAAVIAQQSQKLNRIRKMYARLRNIEKWNKAKEIRSSQGGK* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3576 417 Coils Coil 381 401 - -
Lja1g3576 417 Pfam Cellulase (glycosyl hydrolase family 5) 43 329 IPR001547 GO:0004553|GO:0071704
Lja1g3576 417 Gene3D Glycosidases 21 392 - -
Lja1g3576 417 PANTHER MANNAN ENDO-1,4-BETA-MANNOSIDASE-LIKE PROTEIN 3 412 - -
Lja1g3576 417 SUPERFAMILY (Trans)glycosidases 25 381 IPR017853 -
Lja1g3576 417 PANTHER - 3 412 IPR045053 GO:0004553
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3576 Lja-Chr1 44479851 44482894 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3576 1 408 Glycoside Hydrolase AT5G66460 63.789 0.0 555
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3576 K19355 - gmx:100794126 704.131
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3576 1 44479851 44482894 Lja1g3576 1 44479851 44482894 ECH