Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3569 ATGTCAGGGCACATTTGCTTTGAAGAAGCATTATCAGGCAATGAAGAAAGAAGAGAGAATTCAGAGGATGATGGGTGGAAGAGAATTGGCAGTCTAAAGAAGAAGGCATTAAGTGCTTCCAGCAAATTAAGGCACTCTTTTAAGAAGAAAGGAAGCAGAAAAAATGCTAGTCTTAGCACTTCCCACTCCATTGAGGACATTCGAGATGTTAAGGAGGTTCAAGCTGTGGAAGCATTTCGGCAAGCACTTATGTCGGATAACTTGCTGCCTCCAATGCATGATGATTATCATATGTTATTGAGGTTCTTGAAAGCAAGAAAGTTTGATATTGAGAAAGCAAAGCAGATGTGGGCTAACATGATCAAATGGAGGAAAGACTATGGTACAGATGCAATTTTAGTGGATTTTGAATTCAAGGAATTGTATGAAGTCCTGAAGTACTACCCTCATGGTTATCATGGTGTAGATAAAGAAGGAAGACCTATTTATATTGAGAGACTAGGAAAAGTTGATCCCGATAAGCTTATGCAAGTAACTACCATGGAAAGGTATGTGAGATACCATGTGCAGGGATTGGAGAAAGCACTTGCTGTCAAGTTTCCAGTTTGTTCTATAGTTGCTAAGAGACACATTGATTCAAGCACAACCATTTTGGACGTTAAGGGCGTGGGTTTCAAAAACCTTACCAGGTCTGCACGGGAACTCATCACTCAACTACAGAAGATTGATAATGATTACTATCCTGAAACACTCTATCAATTGTTCATAGTCAATGCTGGTGCTGGTTTTAAGCTTCTCTGGAACACGGTGAAAACATTTCTCGATCCCAAAACTACTTCAAAGATTCATGTTCTAGGATACAAGTTCCAGAGTAAATTACTTGAGTCTATCGATGTTAGTGAGCTGCCAAAATTCCTAGGCGGTAGTTGCACTTGTGTAGATCAGGGTGGTTGTATGAGGTCTGATAAAGGGCCATGGCAAGACCGAAACTTATTAAAGATGGGTCTTGGTGGAGTACAGTGTTCTAAACTAATAGAATCAGTTTCTAACGACGAGGGGAGGGTGATTGAATGTGATGAGACATCTAATCCTATGATAAGAAGTAGCGGTACATCTACAGGTGAATTAGGATCTGAAGTTGAAGTTATCACCTTCCTGAAAGCAACTAGGGATGGTATAAACCCTGTATTGATTCCAGTCCATGAAGAAGAAAGATTGGTTAGTAAGGCTAGCCATGGTGGTGCTTTCTCTTATGATGAGGATGTTCCTCCTATGGTTGACAAGATCGTTGATGTTGGATCGAAGGAGAAGCAAGAAACACCTCAAAACTCATTTGTCTCCAGAGGCTTCTTTTCGGCCCTTTATACTTTTGCTCGTTCAGTAGCATTTTATGCCACTAAGGGAATACTGGTCGCTGAATCTGATTCTGCCAAAAACATACCAATCTTGGCTGTTGATTCAACATCCAAGGGGGAACCTCGTCCTCTTTCGCCTCCTCGCGGATTGACAATGACAAACCTCTCCTCATCTACCTTAGAACGCCTTGGTGAGCTTGAAGAGAAAGTTGACATGCTAGAGTCAAAACTTAATGCCATGCCACATGCAAAAGAAGAGTTGCTGAATGCTGCTATTTATCGAGTGGACGCGTTGGAAGCAGAGCAGATAACTACTAAGAAGGCTTTACACGAAGCTTTGATAAAACAAGAAGAACTTATGACATACAAAGACAATCAGGAAAAAAGCAAATTCAAGACAAGAAGAACATGGTGTTGA 1773 0.4089 MSGHICFEEALSGNEERRENSEDDGWKRIGSLKKKALSASSKLRHSFKKKGSRKNASLSTSHSIEDIRDVKEVQAVEAFRQALMSDNLLPPMHDDYHMLLRFLKARKFDIEKAKQMWANMIKWRKDYGTDAILVDFEFKELYEVLKYYPHGYHGVDKEGRPIYIERLGKVDPDKLMQVTTMERYVRYHVQGLEKALAVKFPVCSIVAKRHIDSSTTILDVKGVGFKNLTRSARELITQLQKIDNDYYPETLYQLFIVNAGAGFKLLWNTVKTFLDPKTTSKIHVLGYKFQSKLLESIDVSELPKFLGGSCTCVDQGGCMRSDKGPWQDRNLLKMGLGGVQCSKLIESVSNDEGRVIECDETSNPMIRSSGTSTGELGSEVEVITFLKATRDGINPVLIPVHEEERLVSKASHGGAFSYDEDVPPMVDKIVDVGSKEKQETPQNSFVSRGFFSALYTFARSVAFYATKGILVAESDSAKNIPILAVDSTSKGEPRPLSPPRGLTMTNLSSSTLERLGELEEKVDMLESKLNAMPHAKEELLNAAIYRVDALEAEQITTKKALHEALIKQEELMTYKDNQEKSKFKTRRTWC* 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3569 590 SUPERFAMILY CRAL/TRIO domain 140 332 IPR036865 -
Lja1g3569 590 SMART sec14_4 140 311 IPR001251 -
Lja1g3569 590 PRINTS Cellular retinaldehyde-binding protein signature 267 286 - -
Lja1g3569 590 PRINTS Cellular retinaldehyde-binding protein signature 98 120 - -
Lja1g3569 590 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 140 314 IPR001251 -
Lja1g3569 590 Coils Coil 508 528 - -
Lja1g3569 590 Pfam CRAL/TRIO, N-terminal domain 92 119 IPR011074 -
Lja1g3569 590 Gene3D - 45 127 - -
Lja1g3569 590 SMART CRAL_TRIO_N_2 95 120 IPR011074 -
Lja1g3569 590 Pfam CRAL/TRIO domain 146 308 IPR001251 -
Lja1g3569 590 CDD SEC14 143 308 IPR001251 -
Lja1g3569 590 PANTHER CELLULAR RETINALDEHYDE BINDING/ALPHA-TOCOPHEROL TRANSPORT, CRAL/TRIO-RELATED 15 585 - -
Lja1g3569 590 Gene3D - 128 336 IPR036865 -
Lja1g3569 590 Coils Coil 225 245 - -
Lja1g3569 590 SUPERFAMILY CRAL/TRIO N-terminal domain 71 135 IPR036273 -
Lja1g3569 590 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 15 585 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3569 Lja-Chr1 44426166 44430971 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3569 99 305 Acyl Lipid Metabolism Gene Families AT5G47730 33.493 4.66e-21 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3569 - - gmx:100811161 822.002
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3569 1 44426166 44430971 Lja1g3569 1 44426166 44430971 ECH