Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3564 ATGATGATTTCTCAGTTCTTCGTGCTTTCTCAGAGAGGCGACAACATCGTCTTCCGCGACTATCGCGGTGAAGTGCAAAAAGGAAGTGCTGAGACATTCTTCCGAAAAGTCAAGTTCTGGAAAGAGGATGCTGAAGGAGATGCTCCTCCTGTTTTTAATGTAGATGGTGTGAACTACTTCCATGTGAAGGCTGCTGGGTTGTTATTTGTTGCTACAACTAGAGTCAATGTCTCCCCTTCTCTTGTTTTGGGGCTTTTGCAACGAATCGCGCGTGTTATCAAGGATTACCTTGGTGTTCTTAATGAGGATTCTTTTAGGAAGAACTTTGTGCTTGTGTATGAATTGCTGGATGAAATGATCGATTTTGGTTATGTGCAAACAACATCTACTGAACTTTTGAAGTCATATGTTTTCAATGAGCCAATTATGATTGATGCTGCGCGGCTTCCTCCCATGGGTCCTGCTTCCATTTTTATGCAAGGGACCAAACGAATGCCAGGTACAGCTATTACAAAATCTGTTTTTGCTAATGAATCTGGTGGTAAGAAGAGGGAAGAGATCTTTGTTGATGTAATTGAGAAAATAAGTGTTACATTCAACTCTAGTGGATTTATACTTACTAGTGAGATAGATGGCACCATTCAAATGAAGAGTTATCTTACTGGTAACCCAGAGATTCGACTTGCTCTCAATGAGGACCTGAGTATAGGAACAAGTGATTATAGAGGTTCAGGTGCCGTGATTTTAGATGATTGCAACTTCCATGAGTCTGTACACCTTGATAGTTTTGATGTTGACCGAACTTTATCATTGGTACCACCAGATGGGGAATTTCCTGTCATGAATTATCGTATGACTCAACCATTTAAGCCACCCTTTCGTATTAATGCATTGATTGAAGAAACAGGACCCCTCAAGGCTGAAGTGACCATTAAAATACGTGCTGAATTCAACTCAAGCATCAATGCTAATACAGTTCTTGTACAGATGCCACTACCAACATCTACGGCTCGTGTTAATTTTGAGTTAGAACCTGGAGCAGTTGGTCACACAACTGATTTTAAGGAAACAAATAAAAGACTGGAATGGGGCATAAAAAAGGTTGTTGGTGGTTCTGAACATACTTTACGAGCAAAACTGACACTTTCACATGAGTTTCATGGAAACATCATGAAAGAAGCAGGGCCTCTTAGCATGACTTTCACTATACCTATGTACAATGCTTCAAGGCTTCAGGTGAAGTACTTGCAAATAGCAAAGAAGTCAAAAGCACATAATCCATACCGATGGGTTAGATATGTAACCCAAGCAAACTCGTATGTTGCTCGGTTGTAA 1335 0.4045 MMISQFFVLSQRGDNIVFRDYRGEVQKGSAETFFRKVKFWKEDAEGDAPPVFNVDGVNYFHVKAAGLLFVATTRVNVSPSLVLGLLQRIARVIKDYLGVLNEDSFRKNFVLVYELLDEMIDFGYVQTTSTELLKSYVFNEPIMIDAARLPPMGPASIFMQGTKRMPGTAITKSVFANESGGKKREEIFVDVIEKISVTFNSSGFILTSEIDGTIQMKSYLTGNPEIRLALNEDLSIGTSDYRGSGAVILDDCNFHESVHLDSFDVDRTLSLVPPDGEFPVMNYRMTQPFKPPFRINALIEETGPLKAEVTIKIRAEFNSSINANTVLVQMPLPTSTARVNFELEPGAVGHTTDFKETNKRLEWGIKKVVGGSEHTLRAKLTLSHEFHGNIMKEAGPLSMTFTIPMYNASRLQVKYLQIAKKSKAHNPYRWVRYVTQANSYVARL* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3564 444 Gene3D Mu homology domain, subdomain B 291 443 - -
Lja1g3564 444 PANTHER AP-4 COMPLEX SUBUNIT MU-LIKE 3 444 - -
Lja1g3564 444 PIRSF AP_complex_mu 2 444 IPR001392 GO:0006886|GO:0016192|GO:0030131
Lja1g3564 444 Pfam Clathrin adaptor complex small chain 2 131 IPR022775 -
Lja1g3564 444 Pfam Adaptor complexes medium subunit family 182 443 IPR028565 -
Lja1g3564 444 SUPERFAMILY SNARE-like 2 142 IPR011012 -
Lja1g3564 444 ProSiteProfiles Mu homology domain (MHD) profile. 184 443 IPR028565 -
Lja1g3564 444 CDD AP4_Mu_N 4 144 - -
Lja1g3564 444 Gene3D - 2 143 - -
Lja1g3564 444 Gene3D Mu homology domain, subdomain B 183 439 - -
Lja1g3564 444 PANTHER AP COMPLEX SUBUNIT MU 3 444 - -
Lja1g3564 444 SUPERFAMILY Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor 182 443 IPR036168 -
Lja1g3564 444 PRINTS Clathrin coat assembly protein signature 13 33 IPR001392 GO:0006886|GO:0016192|GO:0030131
Lja1g3564 444 PRINTS Clathrin coat assembly protein signature 249 276 IPR001392 GO:0006886|GO:0016192|GO:0030131
Lja1g3564 444 PRINTS Clathrin coat assembly protein signature 362 373 IPR001392 GO:0006886|GO:0016192|GO:0030131
Lja1g3564 444 PRINTS Clathrin coat assembly protein signature 102 129 IPR001392 GO:0006886|GO:0016192|GO:0030131
Lja1g3564 444 CDD AP-4_Mu4_Cterm 179 444 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3564 Lja-Chr1 44363730 44368577 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3564 K12402 - gmx:100800985 832.017
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3564 1 44363730 44368577 Lja1g3564 1 44363730 44368577 ECH