Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3560 ATGGGATCAGCTTGTTGTGTTCCTGCGAAGGATCATACTCTTGTCAACCGAACTGGAGGTGAAAGTCTTCATAGAAATACTGTATGTTCGCCATCATGGAGCTTTCGGTGGGATAGATGGGGACGTGTTGCTGGTGAAAGTGAGGATCCTTCCTTTCACAGCTCGCACAGGGTCAACAGAAATGTCAGTATGGAGTTAAAGGGGTCACTAAGTTCTGAAAGAGGCCATTTATCTGATGTTGGAAGCACCCTGGAGAATTCTGTAACACCTATGTCTCAGAAGTCTCCTATACATGAGCATTTGGTTGCAAATCAGATGGCTCCATCTTCAGATCTATCCATGTCAAGTAATTGTTCTACATTGGTGATCAATCTGGCACAATCACCCGAGACTGCAGAATTTTCAATACCAAATCTCTCAATTTCAGTACCTTCAGGTTTCTCAGCACCTATAACAGATCCGATGCCCAGTCAAAATTATCACAATCTTCCTATGTCAGCACCATCAAGATGGGCTCATCGATCTCCAGGGCACCCACTGTTGAGACAAATTTCCGATAGTCGAATCCTGGATTCAGAGGGAAGGCCATCATTTGTACTCTCCAATTGCAGCAATGACCTGATGGCACCTTTTCTGAAATGTGAGTATTTAGGTTCCGGTCATCATAAGTTAAGTGGAACGAGTAGCAGATTCTCATATTCTCCCTCCATGGATTTACAAGCTTGCATGGGTTGCTCGAAGCTTTTGACTGAGAGATCTGCATGGAGCAGTGCTGGCAATAACATTTCAGTTGTCTCTGTTCTAGCCTGTGGTCATGTGTTTCATGCAGAATGCTTGGAGACCATGACAGCAAAGGAAGATAGTTATGATCCAGTTTGTCTAGTTTGTACGGCTGGAGAGAAGAACTTGTTGAAGTTGTCCAAAAAAGGACTTAGGGATCCAAGTGGAGCCGATCTCTCTCCGAGAATGATTCTGCCAGGAAGAAGGGCTTTTGGGCGAGATATCGTAAAGATTGAATTTCCCTGGCCGTATCAGTTAGTTGCAGCAGCTCTCTAA 1056 0.4451 MGSACCVPAKDHTLVNRTGGESLHRNTVCSPSWSFRWDRWGRVAGESEDPSFHSSHRVNRNVSMELKGSLSSERGHLSDVGSTLENSVTPMSQKSPIHEHLVANQMAPSSDLSMSSNCSTLVINLAQSPETAEFSIPNLSISVPSGFSAPITDPMPSQNYHNLPMSAPSRWAHRSPGHPLLRQISDSRILDSEGRPSFVLSNCSNDLMAPFLKCEYLGSGHHKLSGTSSRFSYSPSMDLQACMGCSKLLTERSAWSSAGNNISVVSVLACGHVFHAECLETMTAKEDSYDPVCLVCTAGEKNLLKLSKKGLRDPSGADLSPRMILPGRRAFGRDIVKIEFPWPYQLVAAAL* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3560 351 ProSiteProfiles Zinc finger RING-type profile. 242 297 IPR001841 -
Lja1g3560 351 PANTHER EXPRESSED PROTEIN 214 315 - -
Lja1g3560 351 PANTHER C3HC4-TYPE RING ZINC FINGER PROTEIN 214 315 - -
Lja1g3560 351 PANTHER EXPRESSED PROTEIN 1 209 - -
Lja1g3560 351 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 227 298 IPR013083 -
Lja1g3560 351 PANTHER C3HC4-TYPE RING ZINC FINGER PROTEIN 1 209 - -
Lja1g3560 351 SUPERFAMILY RING/U-box 242 297 - -
Lja1g3560 351 MobiDBLite consensus disorder prediction 75 90 - -
Lja1g3560 351 MobiDBLite consensus disorder prediction 70 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3560 Lja-Chr1 44319837 44321720 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3560 - - gmx:100793040 454.907
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3560 1 44319837 44321720 Lja1g3560 1 44319837 44321720 ECH