Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3559 ATGACTGACGCAGCGGAAGACGCCGTGCGACGCCGTACCGCGGTGGCGGATTATCGGAAGAAACTTCTTCAGCACAAAGAATTGGAATCCAGAGTGCGATCCGTGAGGGAGAACTTGCGAGCTTCGAAGAAAGAGTACAATAAAACTGAAGATGATTTGAAGTCTCTTCAAAGTGTTGGGCAGATAATTGGCGAAGTTCTCAGGCCTCTTGACAATGAACGCTTGATTGTTAAAGCAAGCAGTGGACCCAGGTATGTGGTTGGCTGCCGCAGTAAAGTGGATAAGGAAAAACTGACTTCTGGTACTAGAGTGGTTCTTGATATGACAACACTCACCATAATGCGCGCTCTGCCCCGTGAAGTTGATCCCGTCGTGTACAATATGCTTCATGAAGATCCCGGTAATGTTAGTTACTCAGCTGTTGGTGGTTTATCCGATCAGATCAGGGAATTGAGGGAATCAATTGAATTACCTCTGATGAATCCTGAGCTCTTTCTTCGAGTTGGAATTAAACCTCCCAAGGGTGTTCTTTTATATGGACCTCCTGGCACTGGCAAAACATTGTTAGCTCGGGCAATTGCCAGTAATATAGATGCGAACTTCCTAAAGGTGGTTTCAAGTGCCATAATTGATAAATACATTGGAGAAAGTGCCAGGTTAATAAGAGAGATGTTTGGGTATGCACGTGATCACCAGCCCTGCATTATTTTTATGGATGAGATCGATGCCATTGGCGGTCGTCGTTTCAGTGAGGGAACAAGTGCAGATCGTGAGATTCAGAGAACACTAATGGAGCTGCTTAATCAACTTGATGGATTTGATCAACTAGGGAAGGTAAAAATGATAATGGCAACAAACCGACCTGATGTACTTGACCCTGCTCTCCTGCGTCCTGGGAGATTGGATAGAAAAATAGAAATCCCATTGCCAAATGAACAATCACGTATGGAAATTCTCAAGATTCATGCCGCTGGAATTGCTAAGCACGGTGAAATAGACTATGAAGCTGTTGTGAAGCTTGCAGAGGGATTTAATGGGGCTGATCTTCGGAATATCTGCACGGAAGCTGGAATGTCGGCTATTCGGGCAGAGCGCGACTATGTGATCCATGAAGATTTTATGAAGGCTGTTAGGAAACTGAATGAGGCAAAGAAACTTGAATCTAGTTCACACTACAATGCTGATTTTGGAAAAGACTAG 1200 0.445 MTDAAEDAVRRRTAVADYRKKLLQHKELESRVRSVRENLRASKKEYNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNICTEAGMSAIRAERDYVIHEDFMKAVRKLNEAKKLESSSHYNADFGKD* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3559 399 Pfam Proteasomal ATPase OB C-terminal domain 63 118 IPR032501 -
Lja1g3559 399 Gene3D - 24 128 IPR012340 -
Lja1g3559 399 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 6 395 - -
Lja1g3559 399 SMART AAA_5 172 311 IPR003593 -
Lja1g3559 399 PANTHER BNAC02G30020D PROTEIN 6 395 - -
Lja1g3559 399 Pfam AAA+ lid domain 332 374 IPR041569 -
Lja1g3559 399 Pfam ATPase family associated with various cellular activities (AAA) 176 309 IPR003959 GO:0005524|GO:0016887
Lja1g3559 399 TIGRFAM 26Sp45: 26S proteasome subunit P45 family 23 380 IPR005937 GO:0005737|GO:0030163|GO:0036402
Lja1g3559 399 CDD AAA 142 309 - -
Lja1g3559 399 Coils Coil 25 59 - -
Lja1g3559 399 Gene3D - 129 309 IPR027417 -
Lja1g3559 399 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 136 384 IPR027417 -
Lja1g3559 399 Gene3D - 310 380 - -
Lja1g3559 399 ProSitePatterns AAA-protein family signature. 279 297 IPR003960 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3559 Lja-Chr1 44313747 44318622 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3559 135 379 Miscellaneous Gene Families AT3G47060 39.600 2.15e-53 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3559 K03064 - gmx:100802514 764.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3559 1 44313747 44318622 Lja1g3559 1 44313747 44318622 ECH