Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3558 ATGGCGAAGCATTCCGTGAAGAAGCGGTGGCCATTAGTGTTACTGGCCTTCTTGTCCGTCTCCACGGTGACGGTTCTCTTCATGAGACCAAACAATGCCGATTCCTGCAACACCAAGAACTTCGAACAACAACGGAGTCAGATTCGCTCACCTGTACAAGATAGACCTGGTCCCAGCCCCTTAGATTTCATGAAGTCCAAGCTTGTTCTCATGGTCTCGCACGAGCTTTCTCTTTCAGGTGGGCCTTTGCTTCTGATGGAGTTAGCGTTTCTGTTGAGAGGGGTTGGTTCTGATGTTGTTTGGATCACCAATCAGAATCCTGTAGAAAATGACCAGGTGATTTACAGTTTGGAAAGCAAGATGTTGGACAGAGGAGTCCAGGTCTTGCCTGCCAAAGGTGAAAAGGCTATTGATACAGCTCTTAAAGCTGATATGGTCATTCTAAATACTGCTGTAGCTGGAAAGTGGCTGGATGCTGTTCTCAAGGAAAAAGTTTCCCGTGTTCTTCCAAAGGTTTTATGGTGGATTCATGAGATGCGGGGGCATTATTTCAAAGAGGAATATGTTAAGCACCTCCCCTTTGTTGCAGGTGCCATGATTGATTCACATACAACTGCAGAGTACTGGAAAAATAGGACTAGGGAGCGTTTAAGGATTAAAATGCCTGAAACTTATGTTGTACATCTTGGAAATAGTAAAGAGCTTATGGAAGTTGCAGATGATAGTGTAGCAAAGAGGGTTCTTCGTGAGCACGTTCGTGAATCTCTTGGAGTAAGAAGTGATGATCTGCTTTTTGCCATCATAAATAGTGTTTCACGTGGTAAAGGGCAGGATCTATTTCTCCGCTCCTTTTATGAAAGTTTGCAGTTCATTCAAGAGAAGAAACTTCAGTTGCCATCTTTGCACGCTGTAGTTGTAGGGAGTGATATGAATGCTCAGACAAAGTTTGAAATGGAACTGCGTAAATTTGTTATAGATAAAAAGATTCAGGACCGTGTGCACTTTGTTAACAAAACCCTGGCAGTGGCTCCATACCTGGCTTCTATCGATGTTCTTGTTCAAAATTCTCAGGCACGAGGAGAATGTTTTGGAAGGATAACCATTGAAGCAATGGCATTTCGCCTGCCTGTACTGGGAACTGCAGCTGGAGGCACCATGGAAATTGTGGTGAATGGTTCAACGGGCTTGCTGCATCCTGTTGGAAAAGGCGGCGTGACACCTCTTGCAAATAACATTGTGAAATTGGCAACTCATGTTGAAAAGAGGCTGACTATGGGAAAGAAAGGGTATGAGAGAGTGAAGGAGAGGTTTATGGAGAAGCACATGTCGGATAGAATTGCATTGGTTTTGAAGGATGTTTTGGCTAGGCAACATTAA 1377 0.4401 MAKHSVKKRWPLVLLAFLSVSTVTVLFMRPNNADSCNTKNFEQQRSQIRSPVQDRPGPSPLDFMKSKLVLMVSHELSLSGGPLLLMELAFLLRGVGSDVVWITNQNPVENDQVIYSLESKMLDRGVQVLPAKGEKAIDTALKADMVILNTAVAGKWLDAVLKEKVSRVLPKVLWWIHEMRGHYFKEEYVKHLPFVAGAMIDSHTTAEYWKNRTRERLRIKMPETYVVHLGNSKELMEVADDSVAKRVLREHVRESLGVRSDDLLFAIINSVSRGKGQDLFLRSFYESLQFIQEKKLQLPSLHAVVVGSDMNAQTKFEMELRKFVIDKKIQDRVHFVNKTLAVAPYLASIDVLVQNSQARGECFGRITIEAMAFRLPVLGTAAGGTMEIVVNGSTGLLHPVGKGGVTPLANNIVKLATHVEKRLTMGKKGYERVKERFMEKHMSDRIALVLKDVLARQH* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3558 458 Pfam Glycosyl transferases group 1 252 432 IPR001296 GO:0016757
Lja1g3558 458 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 64 455 - -
Lja1g3558 458 PANTHER GLYCOSYLTRANSFERASE 3 456 - -
Lja1g3558 458 Gene3D Glycogen Phosphorylase B; 239 437 - -
Lja1g3558 458 PANTHER UDP-GLYCOSYLTRANSFERASE SUPERFAMILY PROTEIN 3 456 - -
Lja1g3558 458 MobiDBLite consensus disorder prediction 37 53 - -
Lja1g3558 458 MobiDBLite consensus disorder prediction 37 58 - -
Lja1g3558 458 CDD GT4_PimA-like 132 451 - -
Lja1g3558 458 Pfam Glycosyl-transferase family 4 65 244 IPR041693 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3558 Lja-Chr1 44307955 44312148 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3558 59 458 Glycosyltransferase AT1G75420 81.250 0.0 637
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3558 - - gmx:100791337 784.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3558 1 44307955 44312148 Lja1g3558 1 44307955 44312148 ECH